WormBase Tree Display for Gene: WBGene00019389
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| WBGene00019389 | SMap | S_parent | Sequence | K04F1 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | irld-40 | Person_evidence | WBPerson260 | |||||
| Sequence_name | K04F1.10 | ||||||||
| Molecular_name | K04F1.10 | ||||||||
| K04F1.10.1 | |||||||||
| CE19961 | |||||||||
| Other_name | CELE_K04F1.10 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | irld-40 | ||||||||
| DB_info | Database | AceView | gene | 5C137 | |||||
| WormQTL | gene | WBGene00019389 | |||||||
| WormFlux | gene | WBGene00019389 | |||||||
| NDB | locus_tag | CELE_K04F1.10 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00019389|UniProtKB=Q9TXL4 | |||||||
| family | PTHR21662 | ||||||||
| NCBI | gene | 186996 | |||||||
| RefSeq | protein | NM_001380601.1 | |||||||
| TREEFAM | TREEFAM_ID | TF317243 | |||||||
| TrEMBL | UniProtAcc | Q9TXL4 | |||||||
| UniProt_GCRP | UniProtAcc | Q9TXL4 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:01 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 25 May 2012 15:57:08 | WBPerson2970 | Name_change | CGC_name | irld-40 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | irld | ||||||||
| Allele (54) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (56) | |||||||||
| Paralog (75) | |||||||||
| Structured_description | Automated_description | Enriched in PHB and neurons based on single-cell RNA-seq and RNA-seq studies. Is affected by several genes including elt-2; sir-2.1; and drh-3 based on tiling array; RNA-seq; and microarray studies. Is affected by four chemicals including multi-walled carbon nanotube; resveratrol; and Atrazine based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: Receptor L domain; Receptor L-domain; and Receptor L-domain superfamily. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | K04F1.10 | |||||||
| Corresponding_transcript | K04F1.10.1 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00016595 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00049904 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1027298 | ||||||||
| Expr1153610 | |||||||||
| Expr2012847 | |||||||||
| Expr2031084 | |||||||||
| Microarray_results (14) | |||||||||
| Expression_cluster (39) | |||||||||
| Interaction (53) | |||||||||
| Map_info | Map | V | Position | -17.8065 | |||||
| Positive | Positive_clone | K04F1 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00005154 | ||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
