WormBase Tree Display for Gene: WBGene00019259
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| WBGene00019259 | SMap | S_parent | Sequence | H34C03 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | usp-4 | Person_evidence | WBPerson18908 | |||||
| Laboratory_evidence | DVG | ||||||||
| Sequence_name | H34C03.2 | ||||||||
| Molecular_name | H34C03.2a | ||||||||
| H34C03.2a.1 | |||||||||
| CE19500 | |||||||||
| H34C03.2b | |||||||||
| CE49292 | |||||||||
| H34C03.2b.1 | |||||||||
| Other_name | H34C03.2 | ||||||||
| CELE_H34C03.2 | Accession_evidence | NDB | BX284604 | ||||||
| Public_name | usp-4 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:01 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 03 Oct 2022 14:55:54 | WBPerson21950 | Name_change | CGC_name | usp-4 | ||||
| Other_name | H34C03.2 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | usp | ||||||||
| Allele (76) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00097784 | ||||||||
| 00097785 | |||||||||
| 00097786 | |||||||||
| 00097787 | |||||||||
| 00097788 | |||||||||
| 00097789 | |||||||||
| 00124154 | |||||||||
| 00124155 | |||||||||
| Contained_in_operon | CEOP4196 | ||||||||
| Ortholog (53) | |||||||||
| Paralog (18) | |||||||||
| Structured_description | Automated_description | Predicted to enable cysteine-type deubiquitinase activity. Predicted to be involved in proteolysis. Human ortholog(s) of this gene implicated in chronic myeloid leukemia. Is an ortholog of human USP4 (ubiquitin specific peptidase 4). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:8552 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:12613) | ||||
| Molecular_info | Corresponding_CDS | H34C03.2a | |||||||
| H34C03.2b | |||||||||
| Corresponding_transcript | H34C03.2a.1 | ||||||||
| H34C03.2b.1 | |||||||||
| Other_sequence (67) | |||||||||
| Associated_feature | WBsf981773 | ||||||||
| WBsf996827 | |||||||||
| WBsf228450 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00049531 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00016337 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00076527 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00094632 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00001550 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1019994 | ||||||||
| Expr1038319 | |||||||||
| Expr1153253 | |||||||||
| Expr2004598 | |||||||||
| Expr2022823 | |||||||||
| Drives_construct | WBCnstr00025960 | ||||||||
| Construct_product | WBCnstr00025960 | ||||||||
| Microarray_results (25) | |||||||||
| Expression_cluster (136) | |||||||||
| Interaction (29) | |||||||||
| Map_info | Map | IV | Position | 3.22863 | |||||
| Positive | Positive_clone | H34C03 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00030965 | ||||||||
| WBPaper00031120 | |||||||||
| WBPaper00033099 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00061547 | |||||||||
| WBPaper00061750 | |||||||||
| WBPaper00061999 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
