WormBase Tree Display for Gene: WBGene00019241
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| WBGene00019241 | SMap | S_parent | Sequence | H24K24 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | trm-2A | Person_evidence | WBPerson260 | |||||
| Sequence_name | H24K24.4 | ||||||||
| Molecular_name (15) | |||||||||
| Other_name | CELE_H24K24.4 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | trm-2A | ||||||||
| DB_info | Database (12) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:01 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 07 Dec 2017 13:24:47 | WBPerson1983 | Name_change | CGC_name | trm-2A | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | trm | ||||||||
| Allele (166) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00001442 | ||||||||
| 00001443 | |||||||||
| 00001444 | |||||||||
| 00095467 | |||||||||
| 00095468 | |||||||||
| 00124141 | |||||||||
| 00124142 | |||||||||
| 00124143 | |||||||||
| 00124144 | |||||||||
| Contained_in_operon | CEOP5024 | ||||||||
| Ortholog (38) | |||||||||
| Structured_description | Automated_description | Predicted to enable RNA binding activity and RNA methyltransferase activity. Predicted to be involved in RNA methylation and RNA processing. Is an ortholog of human TRMT2A (tRNA methyltransferase 2 homolog A). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Experimental_model | DOID:0060413 | Homo sapiens | Curator_confirmed | WBPerson324 | ||||
| Disease_relevance | 22q11.2 deletion syndrome (22q11.2DS) is the most common human deletion syndrome caused by deletion of a small piece of chromosome 22, characterized by neurodevelopmental defects, schizophrenia, congenital cardiac and craniofacial abnormalites (includes DiGeorge Syndrome and velocardiofacial syndrome); the 22q11.2 deletion overlaps several protein-coding genes including TRMT2A (tRNA methyltransferase 2 homolog A (S. cerevisiae)); C. elegans H24K24.4 encodes a putative ortholog of human TRMT2A, providing a potential model system to study 22q11.2DS. | Homo sapiens | Paper_evidence | WBPaper00047004 | |||||
| Accession_evidence | OMIM | 611867 | |||||||
| 611151 | |||||||||
| Curator_confirmed | WBPerson324 | ||||||||
| Date_last_updated | 21 Sep 2015 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | H24K24.4a | |||||||
| H24K24.4b | |||||||||
| H24K24.4c | |||||||||
| H24K24.4d | |||||||||
| H24K24.4e | |||||||||
| Corresponding_CDS_history | H24K24.4:wp126 | ||||||||
| Corresponding_transcript | H24K24.4a.1 | ||||||||
| H24K24.4b.1 | |||||||||
| H24K24.4c.1 | |||||||||
| H24K24.4d.1 | |||||||||
| H24K24.4e.1 | |||||||||
| Other_sequence (38) | |||||||||
| Associated_feature | WBsf661045 | ||||||||
| WBsf231371 | |||||||||
| WBsf231372 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00033749 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00049481 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1020472 | ||||||||
| Expr1038309 | |||||||||
| Expr1153203 | |||||||||
| Expr2004581 | |||||||||
| Expr2022806 | |||||||||
| Drives_construct | WBCnstr00025974 | ||||||||
| Construct_product | WBCnstr00025974 | ||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (80) | |||||||||
| Interaction (16) | |||||||||
| Map_info | Map | V | Position | -19.9416 | |||||
| Positive | Positive_clone | H24K24 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
