WormBase Tree Display for Gene: WBGene00019130
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WBGene00019130 | SMap | S_parent | Sequence | F59H5 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | gbas-1 | Person_evidence | WBPerson330 | |||||
Sequence_name | F59H5.1 | ||||||||
Molecular_name | F59H5.1 | ||||||||
F59H5.1.1 | |||||||||
CE31963 | |||||||||
Other_name | CELE_F59H5.1 | Accession_evidence | NDB | BX284602 | |||||
Public_name | gbas-1 | ||||||||
DB_info | Database | AceView | gene | 2C803 | |||||
WormQTL | gene | WBGene00019130 | |||||||
WormFlux | gene | WBGene00019130 | |||||||
NDB | locus_tag | CELE_F59H5.1 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00019130|UniProtKB=Q9TZI4 | |||||||
family | PTHR38627 | ||||||||
NCBI | gene | 173603 | |||||||
RefSeq | protein | NM_061884.7 | |||||||
SwissProt | UniProtAcc | Q9TZI4 | |||||||
TREEFAM | TREEFAM_ID | TF322681 | |||||||
UniProt_GCRP | UniProtAcc | Q9TZI4 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 28 May 2004 13:31:01 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
2 | 03 Aug 2015 10:54:46 | WBPerson2970 | Name_change | CGC_name | gbas-1 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | gbas | ||||||||
Allele (331) | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00098049 | ||||||||
00098050 | |||||||||
00098051 | |||||||||
00098052 | |||||||||
00098053 | |||||||||
Ortholog (19) | |||||||||
Paralog | WBGene00007094 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | |||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00009233 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
WormBase-Compara | |||||||||
WBGene00011047 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WBGene00020464 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WBGene00022398 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Structured_description | Concise_description | F59H5.1 encodes an unfamiliar protein with a low-complexity N-terminal region and a C-terminal DUF545 motif (of unknown function, found solely in nematode proteins); F59H5.1 is expressed in neuronal head ganglia, intestinal cells, hypodermal cells, and coelomocytes, with strong expression in embryos; F59H5.1 has no obvious function or phenotype in RNAi assays, whether in a normal background or in goa-1(-) or goa-1(gf) mutant backgrounds. | Paper_evidence | WBPaper00006194 | |||||
Curator_confirmed | WBPerson567 | ||||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
Automated_description | Enables G-protein alpha-subunit binding activity and guanyl-nucleotide exchange factor activity. Involved in small GTPase mediated signal transduction. Expressed in several structures, including GLR; coelomocyte; distal tip cell; intestine; and neurons. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | F59H5.1 | |||||||
Corresponding_CDS_history | F59H5.1:wp86 | ||||||||
Corresponding_transcript | F59H5.1.1 | ||||||||
Other_sequence | HBC11088_1 | ||||||||
HC06711 | |||||||||
FC809950.1 | |||||||||
MJ03528 | |||||||||
DW718534.1 | |||||||||
MJ03038 | |||||||||
FF682117.1 | |||||||||
JI466642.1 | |||||||||
Associated_feature (19) | |||||||||
Experimental_info | RNAi_result | WBRNAi00016147 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00063364 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00103412 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00000962 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00049239 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00063376 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00049240 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00033229 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr2755 | ||||||||
Expr12631 | |||||||||
Expr1024377 | |||||||||
Expr1038260 | |||||||||
Expr1152980 | |||||||||
Expr2011954 | |||||||||
Expr2030191 | |||||||||
Drives_construct | WBCnstr00010935 | ||||||||
WBCnstr00022339 | |||||||||
WBCnstr00026042 | |||||||||
Construct_product | WBCnstr00010935 | ||||||||
WBCnstr00026042 | |||||||||
Microarray_results (18) | |||||||||
Expression_cluster (100) | |||||||||
Interaction | WBInteraction000258881 | ||||||||
WBInteraction000462078 | |||||||||
WBInteraction000541027 | |||||||||
WBInteraction000542823 | |||||||||
WBInteraction000542828 | |||||||||
WBInteraction000549783 | |||||||||
WBInteraction000556359 | |||||||||
WBInteraction000575385 | |||||||||
Map_info | Map | II | Position | -12.7111 | |||||
Positive | Positive_clone | F59H5 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference | WBPaper00048975 | ||||||||
WBPaper00056687 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |