WormBase Tree Display for Gene: WBGene00018979
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WBGene00018979 | SMap | S_parent | Sequence | F56F4 | |||
---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||
Name | CGC_name | ttr-55 | |||||
Sequence_name | F56F4.2 | ||||||
Molecular_name | F56F4.2 | ||||||
F56F4.2.1 | |||||||
CE48266 | |||||||
Other_name | CELE_F56F4.2 | Accession_evidence | NDB | BX284601 | |||
Public_name | ttr-55 | ||||||
DB_info | Database | AceView | gene | 1G723 | |||
WormQTL | gene | WBGene00018979 | |||||
WormFlux | gene | WBGene00018979 | |||||
NDB | locus_tag | CELE_F56F4.2 | |||||
Panther | gene | CAEEL|WormBase=WBGene00018979|UniProtKB=A8DZ30 | |||||
family | PTHR21700 | ||||||
NCBI | gene | 186397 | |||||
RefSeq | protein | NM_059371.5 | |||||
TREEFAM | TREEFAM_ID | TF315773 | |||||
TrEMBL | UniProtAcc | A8DZ30 | |||||
UniProt_GCRP | UniProtAcc | A8DZ30 | |||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (2) | ||||||
Split_into | WBGene00050896 | ||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | ttr | ||||||
Allele (17) | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation (2) | |||||||
Ortholog | WBGene00039313 | Caenorhabditis briggsae | From_analysis | OrthoMCL | |||
Inparanoid_8 | |||||||
WormBase-Compara | |||||||
WBGene00083461 | Caenorhabditis remanei | From_analysis | TreeFam | ||||
Inparanoid_8 | |||||||
WormBase-Compara | |||||||
WBGene00139125 | Caenorhabditis brenneri | From_analysis | Inparanoid_8 | ||||
WormBase-Compara | |||||||
WBGene00161868 | Caenorhabditis brenneri | From_analysis | Inparanoid_8 | ||||
WormBase-Compara | |||||||
CSP26.g3187 | Caenorhabditis zanzibari | From_analysis | WormBase-Compara | ||||
CSP40.g307 | Caenorhabditis tribulationis | From_analysis | WormBase-Compara | ||||
Csp11.Scaffold58.g344 | Caenorhabditis tropicalis | From_analysis | WormBase-Compara | ||||
FL83_16155 | Caenorhabditis latens | From_analysis | WormBase-Compara | ||||
GCK72_001974 | Caenorhabditis remanei | From_analysis | WormBase-Compara | ||||
chrI_pilon.g1080 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
Paralog (62) | |||||||
Structured_description | Automated_description | Predicted to be located in cell surface and extracellular region. | Paper_evidence | WBPaper00065943 | |||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | F56F4.2 | |||||
Corresponding_CDS_history | F56F4.2:wp182 | ||||||
F56F4.2:wp221 | |||||||
F56F4.2:wp237 | |||||||
Corresponding_transcript | F56F4.2.1 | ||||||
Experimental_info | RNAi_result | WBRNAi00003812 | Inferred_automatically | RNAi_primary | |||
WBRNAi00048754 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr1018992 | ||||||
Expr1152500 | |||||||
Drives_construct | WBCnstr00026153 | ||||||
Construct_product | WBCnstr00026153 | ||||||
Microarray_results (13) | |||||||
Expression_cluster (27) | |||||||
Interaction | WBInteraction000179140 | ||||||
WBInteraction000259038 | |||||||
WBInteraction000273664 | |||||||
WBInteraction000307246 | |||||||
WBInteraction000326230 | |||||||
WBInteraction000357606 | |||||||
WBInteraction000366020 | |||||||
Map_info | Map | I | Position | 0.809717 | Error | 0.00369 | |
Positive | Positive_clone | F56F4 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |