WormBase Tree Display for Gene: WBGene00018845
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| WBGene00018845 | SMap | S_parent | Sequence | F54H12 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | Sequence_name | F54H12.5 | |||||||
| Molecular_name | F54H12.5 | ||||||||
| F54H12.5.1 | |||||||||
| CE40700 | |||||||||
| Other_name | CELE_F54H12.5 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | F54H12.5 | ||||||||
| DB_info | Database | AceView | gene | 3J60 | |||||
| 3J54 | |||||||||
| WormQTL | gene | WBGene00018845 | |||||||
| WormFlux | gene | WBGene00018845 | |||||||
| NDB | locus_tag | CELE_F54H12.5 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00018845|UniProtKB=P34459 | |||||||
| family | PTHR21503 | ||||||||
| NCBI | gene | 186269 | |||||||
| RefSeq | protein | NM_066335.4 | |||||||
| SwissProt | UniProtAcc | P34459 | |||||||
| TREEFAM | TREEFAM_ID | TF315367 | |||||||
| UniProt_GCRP | UniProtAcc | P34459 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:00 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 31 Jan 2007 10:32:21 | WBPerson1867 | Event | Split_into | WBGene00045247 | ||||
| Split_into | WBGene00045247 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Allele (34) | |||||||||
| Strain | WBStrain00036745 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00042469 | ||||||||
| 00042470 | |||||||||
| 00042471 | |||||||||
| Ortholog (21) | |||||||||
| Paralog (62) | |||||||||
| Structured_description | Concise_description | This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins. | Paper_evidence | WBPaper00012854 | |||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Enriched in several structures, including ABalaaaarl; ABalaaaarr; germ line; male distal tip cell; and somatic gonad precursor based on RNA-seq and single-cell RNA-seq studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on tiling array; microarray; and RNA-seq studies. Is affected by thirteen chemicals including hydrogen sulfide; methylmercuric chloride; and Tunicamycin based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domain: F-box domain. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F54H12.5 | |||||||
| Corresponding_CDS_history | F54H12.5:wp171 | ||||||||
| Corresponding_transcript | F54H12.5.1 | ||||||||
| Associated_feature | WBsf651234 | ||||||||
| WBsf227058 | |||||||||
| WBsf227059 | |||||||||
| Experimental_info | Expr_pattern | Expr1026203 | |||||||
| Expr1038129 | |||||||||
| Expr1152187 | |||||||||
| Expr2004184 | |||||||||
| Expr2022404 | |||||||||
| Drives_construct | WBCnstr00026246 | ||||||||
| Construct_product | WBCnstr00026246 | ||||||||
| Microarray_results | A_12_P132310 | ||||||||
| GPL13394_WBGene00018845 | |||||||||
| GPL13914_F54H12.5 | |||||||||
| GPL14144_F54H12.5_56-115_0.881_12_A | |||||||||
| GPL19516_CGZ0023945 | |||||||||
| GPL21109_F54H12.5 | |||||||||
| Expression_cluster (125) | |||||||||
| Interaction (14) | |||||||||
| Map_info | Positive | Positive_clone | F54H12 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Interpolated_map_position | III | -0.460486 | |||||||
| Reference | WBPaper00012854 | ||||||||
| WBPaper00035502 | |||||||||
| Method | Gene |
