WormBase Tree Display for Gene: WBGene00018786
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WBGene00018786 | SMap | S_parent | Sequence | CHROMOSOME_I | |||
---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||
Name | CGC_name | hmbx-1 | Person_evidence | WBPerson42 | |||
Sequence_name | F54A5.1 | ||||||
Molecular_name | F54A5.1 | ||||||
F54A5.1.1 | |||||||
CE20859 | |||||||
Other_name | C54G6.f | Curator_confirmed | WBPerson1983 | ||||
Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||
CELE_F54A5.1 | Accession_evidence | NDB | BX284601 | ||||
Public_name | hmbx-1 | ||||||
DB_info | Database | AceView | gene | 1B465 | |||
WormQTL | gene | WBGene00018786 | |||||
WormFlux | gene | WBGene00018786 | |||||
NDB | locus_tag | CELE_F54A5.1 | |||||
Panther | gene | CAEEL|WormBase=WBGene00018786|UniProtKB=Q9TYT0 | |||||
family | PTHR14618 | ||||||
NCBI | gene | 171679 | |||||
RefSeq | protein | NM_001383445.2 | |||||
SwissProt | UniProtAcc | Q9TYT0 | |||||
TREEFAM | TREEFAM_ID | TF320327 | |||||
UniProt_GCRP | UniProtAcc | Q9TYT0 | |||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (2) | ||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | hmbx | ||||||
Allele (58) | |||||||
Strain | WBStrain00033179 | ||||||
WBStrain00035003 | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation (12) | |||||||
Ortholog (36) | |||||||
Structured_description | Concise_description | hmbx-1 is an ortholog of human HMBOX1 (homeobox containing 1); it belongs to the HNF class of homeobox genes, which encodes an HNF domain and an atypical homeodomain; hmbx-1 is predicted to have DNA binding activity, based on protein domain information; hmbx-1 is expressed in the anal depressor muscle, intestine, anal sphincter muscle, body wall musculature, vulval muscle, ventral nerve cord, and the dorsal nerve cord. | Paper_evidence | WBPaper00046864 | |||
WBPaper00026980 | |||||||
WBPaper00029055 | |||||||
WBPaper00032484 | |||||||
WBPaper00036375 | |||||||
WBPaper00037048 | |||||||
WBPaper00045521 | |||||||
Person_evidence | WBPerson83 | ||||||
Curator_confirmed | WBPerson324 | ||||||
Date_last_updated | 20 Apr 2017 00:00:00 | ||||||
Automated_description | Predicted to enable double-stranded telomeric DNA binding activity. Predicted to be involved in positive regulation of DNA-templated transcription. Located in nucleus. Expressed in body wall musculature; enteric muscle; mechanosensory neurons; somatic nervous system; and vulval muscle. Is an ortholog of human HMBOX1 (homeobox containing 1). | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed (2) | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | F54A5.1 | |||||
Corresponding_transcript | F54A5.1.1 | ||||||
Other_sequence (16) | |||||||
Associated_feature (17) | |||||||
Transcription_factor | WBTranscriptionFactor001020 | ||||||
Experimental_info | RNAi_result | WBRNAi00048212 | Inferred_automatically | RNAi_primary | |||
WBRNAi00116551 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00003761 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00003235 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00032730 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00048213 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr7580 | ||||||
Expr15622 | |||||||
Expr1022153 | |||||||
Expr1038100 | |||||||
Expr1152019 | |||||||
Expr1200322 | |||||||
Expr2012514 | |||||||
Expr2030753 | |||||||
Drives_construct | WBCnstr00012725 | ||||||
WBCnstr00026279 | |||||||
Construct_product | WBCnstr00026279 | ||||||
WBCnstr00038799 | |||||||
Microarray_results (22) | |||||||
Expression_cluster (163) | |||||||
Interaction (13) | |||||||
Anatomy_function | WBbtf0563 | ||||||
WBbtf0564 | |||||||
Map_info | Map | I | Position | -17.4134 | Error | 0.002357 | |
Positive | Positive_clone | F54A5 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Reference | WBPaper00037048 | ||||||
WBPaper00038491 | |||||||
WBPaper00055090 | |||||||
WBPaper00060123 | |||||||
WBPaper00061738 | |||||||
WBPaper00064339 | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |