WormBase Tree Display for Gene: WBGene00018690
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| WBGene00018690 | SMap | S_parent | Sequence | F52D2 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | ||||||||
| Name | CGC_name | fbxa-46 | Person_evidence | WBPerson655 | ||||||
| Sequence_name | F52D2.8 | |||||||||
| Molecular_name | F52D2.8 | |||||||||
| Other_name | CELE_F52D2.8 | Accession_evidence | NDB | BX284606 | ||||||
| Public_name | fbxa-46 | |||||||||
| DB_info | Database | WormQTL | gene | WBGene00018690 | ||||||
| WormFlux | gene | WBGene00018690 | ||||||||
| NDB | locus_tag | CELE_F52D2.8 | ||||||||
| NCBI | gene | 186106 | ||||||||
| Species | Caenorhabditis elegans | |||||||||
| History | Version_change | 1 | 28 May 2004 13:31:00 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | |||
| 2 | 12 Dec 2005 15:18:56 | WBPerson2970 | Name_change | CGC_name | fbxa-46 | |||||
| 3 | 08 Feb 2019 14:12:43 | WBPerson1983 | Event | Changed_class | CDS | Pseudogene | ||||
| Status | Live | |||||||||
| Gene_info | Biotype | SO:0000336 | ||||||||
| Gene_class | fbxa | |||||||||
| Allele (44) | ||||||||||
| RNASeq_FPKM (74) | ||||||||||
| Ortholog (43) | ||||||||||
| Paralog (215) | ||||||||||
| Structured_description | Concise_description | This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction. | Paper_evidence | WBPaper00012854 | ||||||
| Curator_confirmed | WBPerson567 | |||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | |||||||||
| Automated_description | Enriched in several structures, including ABarpaapap; ABarpaappa; ABarpaappp; anterior hypodermis; and neurons based on tiling array; single-cell RNA-seq; and RNA-seq studies. Is affected by several genes including daf-2; eat-2; and clk-1 based on microarray; tiling array; and RNA-seq studies. Is affected by seven chemicals including Zidovudine; Rifampin; and Psoralens based on RNA-seq and microarray studies. | Paper_evidence | WBPaper00065943 | |||||||
| Curator_confirmed | WBPerson324 | |||||||||
| WBPerson37462 | ||||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | |||||||||
| Molecular_info | Corresponding_CDS_history | F52D2.8:wp108 | ||||||||
| F52D2.8:wp152 | ||||||||||
| F52D2.8a:wp270 | ||||||||||
| F52D2.8b:wp270 | ||||||||||
| Corresponding_pseudogene | F52D2.8 | |||||||||
| Experimental_info | Expr_pattern | Expr1024906 | ||||||||
| Expr1038046 | ||||||||||
| Expr1151793 | ||||||||||
| Expr2011548 | ||||||||||
| Expr2029786 | ||||||||||
| Microarray_results (22) | ||||||||||
| Expression_cluster (88) | ||||||||||
| Map_info | Map | X | Position | -17.1017 | ||||||
| Positive | Positive_clone | F52D2 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||||
| Pseudo_map_position | ||||||||||
| Reference | WBPaper00012854 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
