WormBase Tree Display for Gene: WBGene00018680
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WBGene00018680 | SMap | S_parent | Sequence | F52C12 | ||
---|---|---|---|---|---|---|
Identity (6) | ||||||
Gene_info | Biotype | SO:0001217 | ||||
Gene_class | tsen | |||||
Allele (99) | ||||||
RNASeq_FPKM (74) | ||||||
GO_annotation | 00097285 | |||||
00097286 | ||||||
00097287 | ||||||
00097288 | ||||||
Contained_in_operon | CEOP4052 | |||||
Ortholog (24) | ||||||
Structured_description | Automated_description | Predicted to enable endonuclease activity. Predicted to be involved in tRNA-type intron splice site recognition and cleavage. Predicted to be part of tRNA-intron endonuclease complex. Human ortholog(s) of this gene implicated in pontocerebellar hypoplasia type 2A; pontocerebellar hypoplasia type 4; and pontocerebellar hypoplasia type 5. Is an ortholog of human TSEN54 (tRNA splicing endonuclease subunit 54). | Paper_evidence | WBPaper00065943 | ||
Curator_confirmed | WBPerson324 | |||||
WBPerson37462 | ||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||
Date_last_updated | 29 Nov 2023 00:00:00 | |||||
Disease_info | Potential_model | DOID:0060274 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:27561) | |
DOID:0060267 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:27561) | |||
DOID:0060273 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:27561) | |||
Molecular_info | Corresponding_CDS | F52C12.3 | ||||
Corresponding_transcript | F52C12.3.1 | |||||
Other_sequence | HC08381 | |||||
Associated_feature (12) | ||||||
Experimental_info | RNAi_result | WBRNAi00062258 | Inferred_automatically | RNAi_primary | ||
WBRNAi00047928 | Inferred_automatically | RNAi_primary | ||||
WBRNAi00032588 | Inferred_automatically | RNAi_primary | ||||
WBRNAi00110855 | Inferred_automatically | RNAi_primary | ||||
WBRNAi00015370 | Inferred_automatically | RNAi_primary | ||||
Expr_pattern | Expr1021893 | |||||
Expr1038041 | ||||||
Expr1151757 | ||||||
Expr2017535 | ||||||
Expr2035673 | ||||||
Microarray_results (19) | ||||||
Expression_cluster (84) | ||||||
Map_info | Positive | Positive_clone | F52C12 | Inferred_automatically | From sequence, transcript, pseudogene data | |
Interpolated_map_position | IV | -12.7356 | ||||
Method | Gene |