WormBase Tree Display for Gene: WBGene00018550
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| WBGene00018550 | SMap | S_parent | Sequence | F47C12 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | Sequence_name | F47C12.7 | |||||||
| Molecular_name | F47C12.7 | ||||||||
| F47C12.7.1 | |||||||||
| CE48275 | |||||||||
| Other_name | CELE_F47C12.7 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | F47C12.7 | ||||||||
| DB_info | Database | AceView | gene | 4E754 | |||||
| WormQTL | gene | WBGene00018550 | |||||||
| WormFlux | gene | WBGene00018550 | |||||||
| NDB | locus_tag | CELE_F47C12.7 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00018550|UniProtKB=Q20533 | |||||||
| family | PTHR21479 | ||||||||
| NCBI | gene | 185919 | |||||||
| RefSeq | protein | NM_068055.4 | |||||||
| TREEFAM | TREEFAM_ID | TF322745 | |||||||
| TrEMBL | UniProtAcc | Q20533 | |||||||
| UniProt_GCRP | UniProtAcc | Q20533 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:00 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 13 Feb 2013 12:23:27 | WBPerson615 | Event | Split_into | WBGene00235115 | ||||
| Split_into | WBGene00235115 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Allele (13) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog | WBGene00029280 | Caenorhabditis briggsae | From_analysis | OrthoMCL | |||||
| WBGene00149558 | Caenorhabditis brenneri | From_analysis | TreeFam | ||||||
| WBGene00078699 | Caenorhabditis remanei | From_analysis | TreeFam | ||||||
| chrIV_pilon.g10090 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Paralog (34) | |||||||||
| Structured_description | Automated_description | Enriched in NSM; body wall muscle cell; germ line; male-specific anatomical entity; and in male based on tiling array; RNA-seq; and microarray studies. Is affected by several genes including eat-2; tph-1; and csr-1 based on microarray; tiling array; and RNA-seq studies. Is affected by Tunicamycin and Atrazine based on microarray studies. Is predicted to encode a protein with the following domains: Protein of unknown function DUF870, Caenorhabditis species and Caenorhabditis elegans protein of unknown function (DUF870). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F47C12.7 | |||||||
| Corresponding_CDS_history | F47C12.7:wp236 | ||||||||
| Corresponding_transcript | F47C12.7.1 | ||||||||
| Associated_feature | WBsf229933 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00015181 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00047641 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1014584 | ||||||||
| Expr1037989 | |||||||||
| Expr1151483 | |||||||||
| Expr2022071 | |||||||||
| Drives_construct | WBCnstr00026427 | ||||||||
| Construct_product | WBCnstr00026427 | ||||||||
| Microarray_results | SMD_F47C12.7 | ||||||||
| 186033_at | |||||||||
| Aff_F47C12.7 | |||||||||
| GPL19516_CGZ0022370 | |||||||||
| GPL21109_F47C12.7 | |||||||||
| GPL3518_CE10682 | |||||||||
| GPL8673_F47C12_7P00041 | |||||||||
| GPL8673_F47C12_7P00106 | |||||||||
| Expression_cluster (31) | |||||||||
| Interaction (32) | |||||||||
| Map_info | Positive | Positive_clone | F47C12 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Interpolated_map_position | IV | -1.07416 | |||||||
| Method | Gene |
