WormBase Tree Display for Gene: WBGene00018542
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| WBGene00018542 | SMap | S_parent | Sequence | F47C10 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | nhr-187 | Person_evidence | WBPerson600 | |||||
| Sequence_name | F47C10.4 | ||||||||
| Molecular_name | F47C10.4 | ||||||||
| F47C10.4.1 | |||||||||
| CE10662 | |||||||||
| Other_name | CELE_F47C10.4 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | nhr-187 | ||||||||
| DB_info | Database | AceView | gene | 5E336 | |||||
| WormQTL | gene | WBGene00018542 | |||||||
| WormFlux | gene | WBGene00018542 | |||||||
| NDB | locus_tag | CELE_F47C10.4 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00018542|UniProtKB=O01564 | |||||||
| family | PTHR45886 | ||||||||
| NCBI | gene | 185910 | |||||||
| RefSeq | protein | NM_071665.2 | |||||||
| TREEFAM | TREEFAM_ID | TF315970 | |||||||
| TrEMBL | UniProtAcc | O01564 | |||||||
| UniProt_GCRP | UniProtAcc | O01564 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:00 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 22 Jul 2005 10:29:12 | WBPerson2970 | Name_change | CGC_name | nhr-187 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | nhr | ||||||||
| Allele (118) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00025006 | ||||||||
| 00025007 | |||||||||
| 00025008 | |||||||||
| 00123660 | |||||||||
| 00123661 | |||||||||
| 00123662 | |||||||||
| 00123663 | |||||||||
| Ortholog (21) | |||||||||
| Paralog (218) | |||||||||
| Structured_description | Automated_description | Predicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus. Expressed in dorsal nerve cord; head muscle; and head neurons. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F47C10.4 | |||||||
| Corresponding_transcript | F47C10.4.1 | ||||||||
| Associated_feature | WBsf978484 | ||||||||
| Transcription_factor | WBTranscriptionFactor000534 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00047630 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00015171 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00032429 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr7571 | ||||||||
| Expr1011724 | |||||||||
| Expr1151471 | |||||||||
| Expr2014089 | |||||||||
| Expr2032328 | |||||||||
| Drives_construct | WBCnstr00012716 | ||||||||
| WBCnstr00026432 | |||||||||
| Construct_product | WBCnstr00026432 | ||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (47) | |||||||||
| Interaction (14) | |||||||||
| Map_info | Map | V | Position | -7.80107 | Error | 0.040987 | |||
| Positive | Positive_clone | F47C10 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 5339 | |||||||
| 5369 | |||||||||
| 5398 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00027309 | ||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
