WormBase Tree Display for Gene: WBGene00018189
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| WBGene00018189 | SMap | S_parent | Sequence | F38H12 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | nhr-181 | Person_evidence | WBPerson600 | |||||
| Sequence_name | F38H12.3 | ||||||||
| Molecular_name | F38H12.3a | ||||||||
| F38H12.3a.1 | |||||||||
| CE17809 | |||||||||
| F38H12.3c | |||||||||
| CE51663 | |||||||||
| F38H12.3b | |||||||||
| F38H12.3c.1 | |||||||||
| Other_name | CELE_F38H12.3 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | nhr-181 | ||||||||
| DB_info | Database | AceView | gene | 5E571 | |||||
| WormQTL | gene | WBGene00018189 | |||||||
| WormFlux | gene | WBGene00018189 | |||||||
| NDB | locus_tag | CELE_F38H12.3 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00018189|UniProtKB=O16346 | |||||||
| family | PTHR46587 | ||||||||
| NCBI | gene | 185483 | |||||||
| RefSeq | protein | NR_138494.1 | |||||||
| NM_071738.2 | |||||||||
| NM_001330828.1 | |||||||||
| TrEMBL | UniProtAcc | O16346 | |||||||
| A0A168H5K4 | |||||||||
| UniProt_GCRP | UniProtAcc | O16346 | |||||||
| RNAcentral | URSid | URS0000A6ED6D | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:59 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 22 Jul 2005 10:29:12 | WBPerson2970 | Name_change | CGC_name | nhr-181 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | nhr | ||||||||
| Allele (164) | |||||||||
| Strain | WBStrain00031902 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00027902 | ||||||||
| 00027903 | |||||||||
| 00027904 | |||||||||
| 00027905 | |||||||||
| 00027906 | |||||||||
| 00123386 | |||||||||
| 00123387 | |||||||||
| 00123388 | |||||||||
| 00123389 | |||||||||
| Ortholog (25) | |||||||||
| Paralog (218) | |||||||||
| Structured_description | Concise_description | nhr-181 encodes a putative nuclear hormone receptor (NHR), belonging toa large nematode-specific expanded family of NHRs, that inhibits CEP-1-and HUS-1-dependent germline apoptosis as do BMK-1, RAD-50, and RAD-51. | Paper_evidence | WBPaper00023909 | |||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 21 Apr 2007 00:00:00 | ||||||||
| Automated_description | Predicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus. Expressed in head neurons; intestine; neurons; and tail neurons. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F38H12.3a | |||||||
| F38H12.3c | |||||||||
| Corresponding_transcript | F38H12.3b | ||||||||
| F38H12.3a.1 | |||||||||
| F38H12.3c.1 | |||||||||
| Other_sequence | CGC00580_1 | ||||||||
| CGC01248_1 | |||||||||
| Associated_feature | WBsf646738 | ||||||||
| WBsf718291 | |||||||||
| WBsf978586 | |||||||||
| WBsf999727 | |||||||||
| WBsf999728 | |||||||||
| WBsf999729 | |||||||||
| WBsf1019459 | |||||||||
| Transcription_factor | WBTranscriptionFactor000445 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00014582 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00064210 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00031969 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00064184 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00046737 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr7549 | ||||||||
| Expr7550 | |||||||||
| Expr1018128 | |||||||||
| Expr1037831 | |||||||||
| Expr1150614 | |||||||||
| Expr2014083 | |||||||||
| Expr2032323 | |||||||||
| Drives_construct | WBCnstr00012694 | ||||||||
| WBCnstr00012695 | |||||||||
| WBCnstr00026713 | |||||||||
| Construct_product | WBCnstr00026713 | ||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (141) | |||||||||
| Interaction | WBInteraction000177185 | ||||||||
| WBInteraction000225473 | |||||||||
| WBInteraction000277001 | |||||||||
| WBInteraction000526828 | |||||||||
| WBInteraction000548016 | |||||||||
| WBInteraction000548017 | |||||||||
| Map_info | Map | V | Position | -6.53595 | Error | 0.014542 | |||
| Positive | Positive_clone | F38H12 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 5427 | |||||||
| 4937 | |||||||||
| 5652 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00027309 | ||||||||
| WBPaper00057653 | |||||||||
| WBPaper00061789 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
