WormBase Tree Display for Gene: WBGene00018102
expand all nodes | collapse all nodes | view schema
WBGene00018102 | SMap | S_parent | Sequence | F36H5 | ||
---|---|---|---|---|---|---|
Identity (6) | ||||||
Gene_info | Biotype | SO:0001217 | ||||
Gene_class | math | |||||
Allele (95) | ||||||
RNASeq_FPKM (74) | ||||||
Ortholog | WBGene00154588 | Caenorhabditis brenneri | From_analysis | TreeFam | ||
WBGene00143314 | Caenorhabditis brenneri | From_analysis | WormBase-Compara | |||
Csp11.Scaffold630.g19300 | Caenorhabditis tropicalis | From_analysis | WormBase-Compara | |||
Csp11.Scaffold630.g19304 | Caenorhabditis tropicalis | From_analysis | WormBase-Compara | |||
chrII_pilon.g3468 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||
Paralog (85) | ||||||
Structured_description | Automated_description | Enriched in several structures, including ABplpapppa; ABplpppppp; ABprpppppp; dopaminergic neurons; and mechanosensory neurons based on microarray; tiling array; and single-cell RNA-seq studies. Is affected by several genes including daf-16; daf-2; and eat-2 based on microarray; tiling array; and RNA-seq studies. Is affected by eleven chemicals including Tunicamycin; Sodium Chloride; and metformin based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: MATH/TRAF domain; MATH domain; and TRAF-like. | Paper_evidence | WBPaper00065943 | ||
Curator_confirmed (2) | ||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||
Date_last_updated | 29 Nov 2023 00:00:00 | |||||
Molecular_info | Corresponding_CDS | F36H5.3a | ||||
F36H5.3b | ||||||
Corresponding_CDS_history | F36H5.3:wp107 | |||||
F36H5.3:wp153 | ||||||
Corresponding_transcript | F36H5.3a.1 | |||||
F36H5.3b.1 | ||||||
Associated_feature | WBsf986808 | |||||
Experimental_info | RNAi_result | WBRNAi00014456 | Inferred_automatically | RNAi_primary | ||
WBRNAi00046542 | Inferred_automatically | RNAi_primary | ||||
WBRNAi00031884 | Inferred_automatically | RNAi_primary | ||||
Expr_pattern | Expr1015608 | |||||
Expr1150434 | ||||||
Expr2013404 | ||||||
Expr2031638 | ||||||
Microarray_results (22) | ||||||
Expression_cluster (134) | ||||||
SAGE_tag | SAGE:ttgaaattta | Strand | Sense | |||
Unambiguously_mapped | ||||||
SAGE:aagtccttct | Strand | Antisense | ||||
SAGE:ttggcaatat | Strand | Antisense | ||||
SAGE:gagaaggact | Strand | Sense | ||||
Unambiguously_mapped | ||||||
SAGE:aataaacctc | Strand | Antisense | ||||
SAGE:gtttttttca | Strand | Antisense | ||||
SAGE:tgaaaattaa | Strand | Sense | ||||
Unambiguously_mapped | ||||||
SAGE:aataaacctcacacaag | Strand | Antisense | ||||
SAGE:agagagcagg | Strand | Antisense | ||||
SAGE:gaatctcaaa | Strand | Antisense | ||||
Interaction | WBInteraction000192087 | |||||
WBInteraction000338149 | ||||||
WBInteraction000352732 | ||||||
WBInteraction000365770 | ||||||
WBInteraction000413487 | ||||||
Map_info (3) | ||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||
Method | Gene |