WormBase Tree Display for Gene: WBGene00017911
expand all nodes | collapse all nodes | view schema
| WBGene00017911 | SMap | S_parent | Sequence | F29A7 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | fbxb-106 | Person_evidence | WBPerson655 | |||||
| Sequence_name | F29A7.1 | ||||||||
| Molecular_name | F29A7.1a | ||||||||
| F29A7.1a.1 | |||||||||
| CE51361 | |||||||||
| F29A7.1b | |||||||||
| CE51439 | |||||||||
| F29A7.1b.1 | |||||||||
| Other_name | CELE_F29A7.1 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | fbxb-106 | ||||||||
| DB_info | Database | AceView | gene | 2D53 | |||||
| WormQTL | gene | WBGene00017911 | |||||||
| WormFlux | gene | WBGene00017911 | |||||||
| NDB | locus_tag | CELE_F29A7.1 | |||||||
| Panther | gene | CAEEL|Gene_ORFName=CELE_F29A7.1|UniProtKB=A0A131MBD1 | |||||||
| family | PTHR22899 | ||||||||
| NCBI | gene | 173620 | |||||||
| RefSeq | protein | NM_001393024.1 | |||||||
| NM_001322719.1 | |||||||||
| TrEMBL | UniProtAcc | A0A131MCA1 | |||||||
| A0A131MBD1 | |||||||||
| UniProt_GCRP | UniProtAcc | A0A131MBD1 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:59 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 12 Dec 2005 17:22:20 | WBPerson2970 | Name_change | CGC_name | fbxb-106 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | fbxb | ||||||||
| Allele (28) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (26) | |||||||||
| Paralog (11) | |||||||||
| Structured_description | Concise_description | This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; its encoded protein also contains a Pfam-B45 motif of presently unknown function. | Paper_evidence | WBPaper00012854 | |||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Enriched in several structures, including ABalppppaa; ABalpppppa; ABalppppppa; ABplaapappp; and head neurons based on single-cell RNA-seq studies. Is affected by several genes including daf-2; eat-2; and tph-1 based on tiling array; RNA-seq; and microarray studies. Is affected by nine chemicals including rotenone; Rifampin; and allantoin based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: F-box associated and F-box associated domain, type 2. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F29A7.1a | |||||||
| F29A7.1b | |||||||||
| Corresponding_CDS_history | F29A7.1:wp252 | ||||||||
| Corresponding_transcript | F29A7.1a.1 | ||||||||
| F29A7.1b.1 | |||||||||
| Associated_feature | WBsf644021 | ||||||||
| WBsf987048 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00045887 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00014087 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1020716 | ||||||||
| Expr1037699 | |||||||||
| Expr1149791 | |||||||||
| Expr2011601 | |||||||||
| Expr2029840 | |||||||||
| Microarray_results | SMD_F29A7.1 | ||||||||
| 179910_s_at | |||||||||
| Aff_F29A7.1 | |||||||||
| GPL14144_F29A7.1_801-860_0.940_1_A | |||||||||
| GPL19516_CGZ0018827 | |||||||||
| GPL21109_F29A7.1 | |||||||||
| GPL3518_CE09772 | |||||||||
| GPL8673_F29A7_1P00110 | |||||||||
| GPL8673_F29A7_1P00641 | |||||||||
| Expression_cluster (91) | |||||||||
| Interaction (128) | |||||||||
| Map_info | Map | II | Position | -11.7214 | Error | 0.013531 | |||
| Positive | Positive_clone | F29A7 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00012854 | ||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
