WormBase Tree Display for Gene: WBGene00017867
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| WBGene00017867 | SMap | S_parent | Sequence | F27E11 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | slc-28.1 | Person_evidence | WBPerson260 | |||||
| Sequence_name | F27E11.1 | ||||||||
| Molecular_name | F27E11.1a | ||||||||
| F27E11.1a.1 | |||||||||
| CE09732 | |||||||||
| F27E11.1b | |||||||||
| CE51510 | |||||||||
| F27E11.1b.1 | |||||||||
| Other_name | CELE_F27E11.1 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | slc-28.1 | ||||||||
| DB_info | Database | AceView | gene | 5D943 | |||||
| WormQTL | gene | WBGene00017867 | |||||||
| WormFlux | gene | WBGene00017867 | |||||||
| NDB | locus_tag | CELE_F27E11.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00017867|UniProtKB=G5EE77 | |||||||
| family | PTHR10590 | ||||||||
| NCBI | gene | 178770 | |||||||
| RefSeq | protein | NM_071566.5 | |||||||
| NM_001322519.1 | |||||||||
| TrEMBL | UniProtAcc | A0A131MBN5 | |||||||
| G5EE77 | |||||||||
| UniProt_GCRP | UniProtAcc | G5EE77 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:59 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 03 May 2013 15:28:52 | WBPerson2970 | Name_change | CGC_name | slc-28.1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | slc | ||||||||
| Allele (44) | |||||||||
| Strain | WBStrain00031545 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00002056 | ||||||||
| 00002057 | |||||||||
| 00002058 | |||||||||
| 00002059 | |||||||||
| 00015549 | |||||||||
| 00015550 | |||||||||
| 00123174 | |||||||||
| 00123175 | |||||||||
| 00123176 | |||||||||
| Ortholog (44) | |||||||||
| Paralog | WBGene00017868 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
| Structured_description | Automated_description | Predicted to enable nucleoside:sodium symporter activity. Predicted to be involved in nucleoside transmembrane transport. Predicted to be located in plasma membrane. Is an ortholog of human SLC28A1 (solute carrier family 28 member 1) and SLC28A2 (solute carrier family 28 member 2). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F27E11.1a | |||||||
| F27E11.1b | |||||||||
| Corresponding_transcript | F27E11.1a.1 | ||||||||
| F27E11.1b.1 | |||||||||
| Other_sequence | MCC00865_1 | ||||||||
| MI05377 | |||||||||
| MC00231 | |||||||||
| JI168707.1 | |||||||||
| MIC04719_1 | |||||||||
| Oden_isotig26360 | |||||||||
| Associated_feature | WBsf999627 | ||||||||
| WBsf1019375 | |||||||||
| WBsf231576 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00045751 | Inferred_automatically | RNAi_primary | |||||
| Expr_pattern | Expr1024710 | ||||||||
| Expr1149661 | |||||||||
| Expr2015873 | |||||||||
| Expr2034106 | |||||||||
| Drives_construct | WBCnstr00026954 | ||||||||
| Construct_product | WBCnstr00026954 | ||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (121) | |||||||||
| Interaction | WBInteraction000232883 | ||||||||
| WBInteraction000314352 | |||||||||
| WBInteraction000319199 | |||||||||
| WBInteraction000374927 | |||||||||
| WBInteraction000395019 | |||||||||
| WBInteraction000407332 | |||||||||
| Map_info | Map | V | Position | -11.5204 | |||||
| Positive | Positive_clone | F27E11 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00055090 | |||||||||
| WBPaper00064898 | |||||||||
| WBPaper00065331 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
