WormBase Tree Display for Gene: WBGene00017773
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| WBGene00017773 | SMap | S_parent | Sequence | F25B5 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | dct-6 | Paper_evidence | WBPaper00031095 | |||||
| Person_evidence | WBPerson1157 | ||||||||
| Sequence_name | F25B5.1 | ||||||||
| Molecular_name | F25B5.1a | ||||||||
| F25B5.1a.1 | |||||||||
| CE39493 | |||||||||
| F25B5.1b | |||||||||
| CE39494 | |||||||||
| F25B5.1b.1 | |||||||||
| Other_name | CELE_F25B5.1 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | dct-6 | ||||||||
| DB_info | Database | WormQTL | gene | WBGene00017773 | |||||
| WormFlux | gene | WBGene00017773 | |||||||
| NDB | locus_tag | CELE_F25B5.1 | |||||||
| NCBI | gene | 175846 | |||||||
| RefSeq | protein | NM_001038268.5 | |||||||
| NM_001038269.5 | |||||||||
| SwissProt | UniProtAcc | Q09313 | |||||||
| TREEFAM | TREEFAM_ID | TF316665 | |||||||
| UniProt_GCRP | UniProtAcc | Q09313 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:59 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 08 Nov 2007 16:33:50 | WBPerson2970 | Name_change | CGC_name | dct-6 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | dct | ||||||||
| Allele (58) | |||||||||
| Strain | WBStrain00003575 | ||||||||
| WBStrain00031750 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (23) | |||||||||
| Structured_description | Automated_description | Enriched in several structures, including ABarpaapap; anterior hypodermis; g1; sensory neurons; and somatic nervous system based on Chronogram; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray; RNA-seq; and proteomic studies. Is affected by eleven chemicals including diallyl trisulfide; rotenone; and stavudine based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: WD40/YVTN repeat-like-containing domain superfamily and WD40-repeat-containing domain superfamily. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F25B5.1a | |||||||
| F25B5.1b | |||||||||
| Corresponding_CDS_history | F25B5.1:wp146 | ||||||||
| F25B5.1a:wp152 | |||||||||
| Corresponding_transcript | F25B5.1a.1 | ||||||||
| F25B5.1b.1 | |||||||||
| Other_sequence (17) | |||||||||
| Associated_feature | WBsf645236 | ||||||||
| WBsf716543 | |||||||||
| WBsf717075 | |||||||||
| WBsf717909 | |||||||||
| WBsf992588 | |||||||||
| WBsf992589 | |||||||||
| WBsf992590 | |||||||||
| WBsf1014990 | |||||||||
| WBsf225037 | |||||||||
| WBsf225038 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00103308 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00013851 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00005552 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00001232 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00045473 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Chronogram531 | ||||||||
| Expr5849 | |||||||||
| Expr1015247 | |||||||||
| Expr1037636 | |||||||||
| Expr1149392 | |||||||||
| Expr2010820 | |||||||||
| Expr2029057 | |||||||||
| Drives_construct | WBCnstr00004027 | ||||||||
| WBCnstr00027030 | |||||||||
| Construct_product | WBCnstr00027030 | ||||||||
| Microarray_results (24) | |||||||||
| Expression_cluster (146) | |||||||||
| Interaction (13) | |||||||||
| Map_info | Map | III | Position | -1.42876 | Error | 0.000404 | |||
| Positive | Positive_clone | F25B5 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00031095 | ||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
