WormBase Tree Display for Gene: WBGene00017534
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| WBGene00017534 | SMap | S_parent | Sequence | F17A9 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | cwf-19L1 | |||||||
| Sequence_name | F17A9.2 | ||||||||
| Molecular_name | F17A9.2 | ||||||||
| F17A9.2.1 | |||||||||
| CE19798 | |||||||||
| Other_name | CELE_F17A9.2 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | cwf-19L1 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:59 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 12 Mar 2020 13:19:13 | WBPerson1983 | Name_change | CGC_name | cwf-19L1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | cwf | ||||||||
| Allele (80) | |||||||||
| Strain | WBStrain00001253 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00027464 | ||||||||
| 00027465 | |||||||||
| 00027466 | |||||||||
| Ortholog (50) | |||||||||
| Paralog | WBGene00015156 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Predicted to enable RNA lariat debranching enzyme activator activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to be part of post-mRNA release spliceosomal complex. Human ortholog(s) of this gene implicated in autosomal recessive spinocerebellar ataxia 17. Is an ortholog of human CWF19L1 (CWF19 like cell cycle control factor 1). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0080064 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:25613) | ||||
| Molecular_info | Corresponding_CDS | F17A9.2 | |||||||
| Corresponding_transcript | F17A9.2.1 | ||||||||
| Other_sequence (56) | |||||||||
| Associated_feature | WBsf646854 | ||||||||
| WBsf646855 | |||||||||
| WBsf661307 | |||||||||
| WBsf661308 | |||||||||
| WBsf661309 | |||||||||
| WBsf661310 | |||||||||
| WBsf231839 | |||||||||
| WBsf231840 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00013450 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00031058 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00044856 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00008144 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00093019 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00013451 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Chronogram2027 | ||||||||
| Expr1016110 | |||||||||
| Expr1037528 | |||||||||
| Expr1148820 | |||||||||
| Expr2002677 | |||||||||
| Expr2020893 | |||||||||
| Drives_construct | WBCnstr00002147 | ||||||||
| WBCnstr00027228 | |||||||||
| Construct_product | WBCnstr00027228 | ||||||||
| Microarray_results (21) | |||||||||
| Expression_cluster (109) | |||||||||
| SAGE_tag | SAGE:tcgagaagac | Strand | Antisense | ||||||
| SAGE:tcgagaagactttcatc | Strand | Antisense | |||||||
| SAGE:gtcaatgaag | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| SAGE:gtcaatgaaggatgtcc | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| SAGE:ccgaaaggac | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| Interaction (46) | |||||||||
| Map_info | Map | V | Position | -0.333106 | |||||
| Positive | Positive_clone | F17A9 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
