WormBase Tree Display for Gene: WBGene00017460
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WBGene00017460 | SMap | S_parent | Sequence | F14D2 | |||
---|---|---|---|---|---|---|---|
Identity (6) | |||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | bath | ||||||
Allele (105) | |||||||
RNASeq_FPKM (74) | |||||||
Contained_in_operon | CEOP2092 | ||||||
Ortholog | WBGene00060799 | Caenorhabditis remanei | From_analysis | OMA | |||
TreeFam | |||||||
Inparanoid_8 | |||||||
WormBase-Compara | |||||||
WBGene00038820 | Caenorhabditis briggsae | From_analysis | OMA | ||||
WBGene00146242 | Caenorhabditis brenneri | From_analysis | OMA | ||||
TreeFam | |||||||
WBGene00152896 | Caenorhabditis brenneri | From_analysis | TreeFam | ||||
WBGene00091340 | Pristionchus pacificus | From_analysis | Inparanoid_8 | ||||
WBGene00094146 | Pristionchus pacificus | From_analysis | Inparanoid_8 | ||||
WBGene00112457 | Pristionchus pacificus | From_analysis | OMA | ||||
CSP31.g12656 | Caenorhabditis uteleia | From_analysis | WormBase-Compara | ||||
GCK72_007445 | Caenorhabditis remanei | From_analysis | WormBase-Compara | ||||
chrII_pilon.g3946 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
Paralog (81) | |||||||
Structured_description | Automated_description | Enriched in germ line; germline precursor cell; head mesodermal cell; neurons; and retrovesicular ganglion based on tiling array; RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including daf-2; dpy-10; and gld-1 based on microarray and RNA-seq studies. Is affected by eleven chemicals including manganese chloride; Zidovudine; and Psoralens based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: MATH/TRAF domain; MATH domain; TRAF-like; SKP1/BTB/POZ domain superfamily; Phosphorylation site; and BTB/POZ domain. | Paper_evidence | WBPaper00065943 | |||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | F14D2.12 | |||||
Corresponding_transcript | F14D2.12.1 | ||||||
Other_sequence | CRC04545_1 | ||||||
CR11142 | |||||||
Associated_feature | WBsf222848 | ||||||
Experimental_info | RNAi_result (11) | ||||||
Expr_pattern | Expr1021269 | ||||||
Expr1037511 | |||||||
Expr1148547 | |||||||
Expr2009547 | |||||||
Expr2027784 | |||||||
Drives_construct | WBCnstr00027282 | ||||||
Construct_product | WBCnstr00027282 | ||||||
Microarray_results (18) | |||||||
Expression_cluster (112) | |||||||
Interaction | WBInteraction000031169 | ||||||
WBInteraction000511463 | |||||||
WBInteraction000547397 | |||||||
Map_info | Map | II | Position | -6.59207 | Error | 0.024104 | |
Positive | Positive_clone | F14D2 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |