WormBase Tree Display for Gene: WBGene00017085
expand all nodes | collapse all nodes | view schema
| WBGene00017085 | SMap | S_parent | Sequence | E01A2 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | srrt-1 | Person_evidence | WBPerson481 | |||||
| Sequence_name | E01A2.2 | ||||||||
| Molecular_name | E01A2.2a | ||||||||
| E01A2.2a.1 | |||||||||
| CE20643 | |||||||||
| E01A2.2b | |||||||||
| CE33369 | |||||||||
| E01A2.2b.1 | |||||||||
| E01A2.2b.2 | |||||||||
| E01A2.2b.3 | |||||||||
| E01A2.2b.4 | |||||||||
| Other_name | CELE_E01A2.2 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | srrt-1 | ||||||||
| DB_info | Database | AceView | gene | 1E703 | |||||
| WormQTL | gene | WBGene00017085 | |||||||
| WormFlux | gene | WBGene00017085 | |||||||
| NDB | locus_tag | CELE_E01A2.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00017085|UniProtKB=Q966L5 | |||||||
| family | PTHR13165 | ||||||||
| NCBI | gene | 171996 | |||||||
| RefSeq | protein | NM_058901.5 | |||||||
| NM_001392096.1 | |||||||||
| SwissProt | UniProtAcc | Q966L5 | |||||||
| TREEFAM | TREEFAM_ID | TF317609 | |||||||
| UniProt_GCRP | UniProtAcc | Q966L5 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:58 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 02 Mar 2022 23:57:00 | WBPerson51134 | Name_change | CGC_name | srrt-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | srrt | ||||||||
| Allele (48) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00091031 | ||||||||
| 00091032 | |||||||||
| 00091033 | |||||||||
| 00091034 | |||||||||
| 00091035 | |||||||||
| 00091036 | |||||||||
| 00091037 | |||||||||
| 00122568 | |||||||||
| Ortholog (38) | |||||||||
| Structured_description | Automated_description | Predicted to be involved in primary miRNA processing. Predicted to be located in nuclear body. Is an ortholog of human SRRT (serrate, RNA effector molecule). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | E01A2.2a | |||||||
| E01A2.2b | |||||||||
| Corresponding_transcript | E01A2.2a.1 | ||||||||
| E01A2.2b.1 | |||||||||
| E01A2.2b.2 | |||||||||
| E01A2.2b.3 | |||||||||
| E01A2.2b.4 | |||||||||
| Other_sequence (41) | |||||||||
| Associated_feature | WBsf643180 | ||||||||
| WBsf217480 | |||||||||
| WBsf217481 | |||||||||
| WBsf217482 | |||||||||
| WBsf217483 | |||||||||
| WBsf217484 | |||||||||
| Experimental_info | RNAi_result (18) | ||||||||
| Expr_pattern | Expr1024473 | ||||||||
| Expr1037344 | |||||||||
| Expr1147550 | |||||||||
| Expr2002112 | |||||||||
| Expr2020337 | |||||||||
| Drives_construct | WBCnstr00027580 | ||||||||
| Construct_product | WBCnstr00027580 | ||||||||
| Microarray_results (28) | |||||||||
| Expression_cluster (143) | |||||||||
| Interaction (12) | |||||||||
| Map_info | Positive | Positive_clone | E01A2 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Interpolated_map_position | I | -1.70252 | |||||||
| Reference | WBPaper00033003 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00049828 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00064201 | |||||||||
| Method | Gene |
