WormBase Tree Display for Gene: WBGene00017003
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| WBGene00017003 | SMap | S_parent | Sequence | D1007 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | tmem-39 | Paper_evidence | WBPaper00060994 | |||||
| Person_evidence | WBPerson244692 | ||||||||
| Sequence_name | D1007.5 | ||||||||
| Molecular_name | D1007.5a | ||||||||
| D1007.5a.1 | |||||||||
| CE29034 | |||||||||
| D1007.5b | |||||||||
| CE33577 | |||||||||
| D1007.5b.1 | |||||||||
| Other_name | CELE_D1007.5 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | tmem-39 | ||||||||
| DB_info | Database | AceView | gene | 1F150 | |||||
| WormQTL | gene | WBGene00017003 | |||||||
| WormFlux | gene | WBGene00017003 | |||||||
| NDB | locus_tag | CELE_D1007.5 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00017003|UniProtKB=O01870 | |||||||
| family | PTHR12995 | ||||||||
| NCBI | gene | 172060 | |||||||
| RefSeq | protein | NM_001025901.6 | |||||||
| NM_001025900.5 | |||||||||
| TREEFAM | TREEFAM_ID | TF321110 | |||||||
| TrEMBL | UniProtAcc | H2KZB3 | |||||||
| O01870 | |||||||||
| UniProt_GCRP | UniProtAcc | O01870 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:58 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 14 Jun 2021 10:56:45 | WBPerson1983 | Name_change | CGC_name | tmem-39 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | tmem | ||||||||
| Allele (44) | |||||||||
| Strain | WBStrain00055636 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00022190 | ||||||||
| 00022191 | |||||||||
| 00022192 | |||||||||
| Contained_in_operon | CEOP1184 | ||||||||
| Ortholog (39) | |||||||||
| Structured_description | Automated_description | Predicted to be located in membrane. Expressed in hypodermis; intestine; and nervous system. Is an ortholog of human TMEM39A (transmembrane protein 39A) and TMEM39B (transmembrane protein 39B). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | D1007.5a | |||||||
| D1007.5b | |||||||||
| Corresponding_transcript | D1007.5a.1 | ||||||||
| D1007.5b.1 | |||||||||
| Other_sequence (40) | |||||||||
| Associated_feature | WBsf664153 | ||||||||
| WBsf664154 | |||||||||
| WBsf983444 | |||||||||
| WBsf219284 | |||||||||
| WBsf219285 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00030311 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00003261 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00076252 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00117063 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00043330 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00024929 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00024928 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00023108 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00062012 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr15675 | ||||||||
| Expr1025030 | |||||||||
| Expr1037303 | |||||||||
| Expr1147310 | |||||||||
| Expr2002006 | |||||||||
| Expr2020230 | |||||||||
| Drives_construct | WBCnstr00027642 | ||||||||
| WBCnstr00042472 | |||||||||
| Construct_product | WBCnstr00027642 | ||||||||
| WBCnstr00042472 | |||||||||
| Microarray_results (24) | |||||||||
| Expression_cluster (110) | |||||||||
| Interaction | WBInteraction000029466 | ||||||||
| WBInteraction000266454 | |||||||||
| WBInteraction000276646 | |||||||||
| WBInteraction000412773 | |||||||||
| WBInteraction000453523 | |||||||||
| WBInteraction000461766 | |||||||||
| WBInteraction000462581 | |||||||||
| Map_info | Positive | Positive_clone | D1007 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Interpolated_map_position | I | -1.04216 | |||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00055090 | |||||||||
| WBPaper00060970 | |||||||||
| WBPaper00060994 | |||||||||
| WBPaper00066191 | |||||||||
| Method | Gene |
