WormBase Tree Display for Gene: WBGene00016926
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WBGene00016926 | SMap | S_parent | Sequence | C54F6 | |||
---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||
Name | CGC_name | nhr-171 | Person_evidence | WBPerson600 | |||
Sequence_name | C54F6.8 | ||||||
Molecular_name | C54F6.8 | ||||||
C54F6.8.1 | |||||||
CE47113 | |||||||
Other_name | CELE_C54F6.8 | Accession_evidence | NDB | BX284605 | |||
Public_name | nhr-171 | ||||||
DB_info | Database | AceView | gene | 5H991 | |||
WormQTL | gene | WBGene00016926 | |||||
WormFlux | gene | WBGene00016926 | |||||
NDB | locus_tag | CELE_C54F6.8 | |||||
Panther | gene | CAEEL|WormBase=WBGene00016926|UniProtKB=O16443 | |||||
family | PTHR45886 | ||||||
NCBI | gene | 183807 | |||||
RefSeq | protein | NM_072533.3 | |||||
TREEFAM | TREEFAM_ID | TF315970 | |||||
TrEMBL | UniProtAcc | O16443 | |||||
UniProt_GCRP | UniProtAcc | O16443 | |||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (2) | ||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | nhr | ||||||
Allele (33) | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation | 00028052 | ||||||
00028053 | |||||||
00028054 | |||||||
00122429 | |||||||
00122430 | |||||||
00122431 | |||||||
00122432 | |||||||
Ortholog (36) | |||||||
Paralog (218) | |||||||
Structured_description | Automated_description | Predicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus. | Paper_evidence | WBPaper00065943 | |||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | C54F6.8 | |||||
Corresponding_CDS_history | C54F6.8:wp230 | ||||||
Corresponding_transcript | C54F6.8.1 | ||||||
Associated_feature | WBsf661424 | ||||||
WBsf1000469 | |||||||
WBsf1019919 | |||||||
WBsf231990 | |||||||
Transcription_factor | WBTranscriptionFactor000977 | ||||||
Experimental_info | RNAi_result | WBRNAi00012407 | Inferred_automatically | RNAi_primary | |||
WBRNAi00030154 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00043170 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr10374 | ||||||
Expr10375 | |||||||
Expr10376 | |||||||
Expr1011403 | |||||||
Expr1147148 | |||||||
Expr2014072 | |||||||
Expr2032312 | |||||||
Drives_construct | WBCnstr00015286 | ||||||
WBCnstr00015287 | |||||||
WBCnstr00027701 | |||||||
Construct_product | WBCnstr00027701 | ||||||
Microarray_results (19) | |||||||
Expression_cluster (75) | |||||||
Interaction | WBInteraction000031452 | ||||||
WBInteraction000366296 | |||||||
WBInteraction000419045 | |||||||
WBInteraction000512489 | |||||||
WBInteraction000521471 | |||||||
WBInteraction000568433 | |||||||
Map_info | Map | V | Position | 0.766185 | Error | 0.001637 | |
Positive | Positive_clone | C54F6 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Mapping_data | Multi_point | 5336 | |||||
5350 | |||||||
Pseudo_map_position | |||||||
Reference | WBPaper00026592 | ||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |