WormBase Tree Display for Gene: WBGene00016926
expand all nodes | collapse all nodes | view schema
WBGene00016926 | SMap | S_parent | Sequence | C54F6 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | nhr-171 | Person_evidence | WBPerson600 | |||||
Sequence_name | C54F6.8 | ||||||||
Molecular_name | C54F6.8 | ||||||||
C54F6.8.1 | |||||||||
CE47113 | |||||||||
Other_name | CELE_C54F6.8 | Accession_evidence | NDB | BX284605 | |||||
Public_name | nhr-171 | ||||||||
DB_info | Database | AceView | gene | 5H991 | |||||
WormQTL | gene | WBGene00016926 | |||||||
WormFlux | gene | WBGene00016926 | |||||||
NDB | locus_tag | CELE_C54F6.8 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00016926|UniProtKB=O16443 | |||||||
family | PTHR45886 | ||||||||
NCBI | gene | 183807 | |||||||
RefSeq | protein | NM_072533.3 | |||||||
TREEFAM | TREEFAM_ID | TF315970 | |||||||
TrEMBL | UniProtAcc | O16443 | |||||||
UniProt_GCRP | UniProtAcc | O16443 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 28 May 2004 13:30:58 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
2 | 22 Jul 2005 10:29:12 | WBPerson2970 | Name_change | CGC_name | nhr-171 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | nhr | ||||||||
Allele (33) | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00028052 | ||||||||
00028053 | |||||||||
00028054 | |||||||||
00122429 | |||||||||
00122430 | |||||||||
00122431 | |||||||||
00122432 | |||||||||
Ortholog (36) | |||||||||
Paralog (218) | |||||||||
Structured_description | Automated_description | Predicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus. | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | C54F6.8 | |||||||
Corresponding_CDS_history | C54F6.8:wp230 | ||||||||
Corresponding_transcript | C54F6.8.1 | ||||||||
Associated_feature | WBsf661424 | ||||||||
WBsf1000469 | |||||||||
WBsf1019919 | |||||||||
WBsf231990 | |||||||||
Transcription_factor | WBTranscriptionFactor000977 | ||||||||
Experimental_info | RNAi_result | WBRNAi00012407 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00030154 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00043170 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr10374 | ||||||||
Expr10375 | |||||||||
Expr10376 | |||||||||
Expr1011403 | |||||||||
Expr1147148 | |||||||||
Expr2014072 | |||||||||
Expr2032312 | |||||||||
Drives_construct | WBCnstr00015286 | ||||||||
WBCnstr00015287 | |||||||||
WBCnstr00027701 | |||||||||
Construct_product | WBCnstr00027701 | ||||||||
Microarray_results (19) | |||||||||
Expression_cluster (75) | |||||||||
Interaction (6) | |||||||||
Map_info | Map | V | Position | 0.766185 | Error | 0.001637 | |||
Positive | Positive_clone | C54F6 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Mapping_data | Multi_point | 5336 | |||||||
5350 | |||||||||
Pseudo_map_position | |||||||||
Reference | WBPaper00026592 | ||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |