WormBase Tree Display for Gene: WBGene00016915
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| WBGene00016915 | SMap | S_parent | Sequence | C54D2 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | idpp-11 | Person_evidence | WBPerson1820 | |||||
| Sequence_name | C54D2.1 | ||||||||
| Molecular_name | C54D2.1a | ||||||||
| C54D2.1a.1 | |||||||||
| CE53131 | |||||||||
| C54D2.1b | |||||||||
| CE53238 | |||||||||
| C54D2.1b.1 | |||||||||
| Other_name | CELE_C54D2.1 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | idpp-11 | ||||||||
| DB_info | Database | AceView | gene | XI463 | |||||
| WormQTL | gene | WBGene00016915 | |||||||
| WormFlux | gene | WBGene00016915 | |||||||
| NDB | locus_tag | CELE_C54D2.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00016915|UniProtKB=Q18839 | |||||||
| family | PTHR37853 | ||||||||
| NCBI | gene | 183776 | |||||||
| RefSeq | protein | NM_001373378.1 | |||||||
| NM_001373377.1 | |||||||||
| TrEMBL | UniProtAcc | A0A4V0IKE1 | |||||||
| A0A4V6M3D3 | |||||||||
| UniProt_GCRP | UniProtAcc | A0A4V6M3D3 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:58 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 04 Jan 2022 10:41:14 | WBPerson1983 | Name_change | CGC_name | idpp-11 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | idpp | ||||||||
| Allele (51) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (22) | |||||||||
| Structured_description | Automated_description | Enriched in GABAergic neurons; arcade cell; hypodermis; and pharyngeal cell based on microarray; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including daf-2; skn-1; and hsf-1 based on microarray; tiling array; and RNA-seq studies. Is affected by twenty-two chemicals including Ethanol; methylmercury hydroxide; and manganese chloride based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: EB module and EB domain. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C54D2.1a | |||||||
| C54D2.1b | |||||||||
| Corresponding_CDS_history | C54D2.1:wp167 | ||||||||
| C54D2.1:wp184 | |||||||||
| C54D2.1:wp271 | |||||||||
| Corresponding_transcript | C54D2.1a.1 | ||||||||
| C54D2.1b.1 | |||||||||
| Other_sequence (23) | |||||||||
| Associated_feature | WBsf648331 | ||||||||
| WBsf1005970 | |||||||||
| WBsf1005971 | |||||||||
| WBsf1005972 | |||||||||
| WBsf1005973 | |||||||||
| WBsf1023319 | |||||||||
| WBsf1023320 | |||||||||
| WBsf235989 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00043143 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00012388 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1026764 | ||||||||
| Expr1037259 | |||||||||
| Expr1147115 | |||||||||
| Expr2001915 | |||||||||
| Expr2020139 | |||||||||
| Drives_construct | WBCnstr00027708 | ||||||||
| Construct_product | WBCnstr00027708 | ||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (168) | |||||||||
| Interaction (12) | |||||||||
| Map_info | Map | X | Position | -1.08381 | |||||
| Positive | Positive_clone | C54D2 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00063926 | ||||||||
| WBPaper00064648 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
