WormBase Tree Display for Gene: WBGene00016901
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| WBGene00016901 | SMap | S_parent | Sequence | C53C11 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | Sequence_name | C53C11.4 | |||||||
| Molecular_name | C53C11.4 | ||||||||
| C53C11.4.1 | |||||||||
| CE04267 | |||||||||
| Other_name | CELE_C53C11.4 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | C53C11.4 | ||||||||
| DB_info | Database | AceView | gene | XR923 | |||||
| WormFlux | gene | WBGene00016901 | |||||||
| NDB | locus_tag | CELE_C53C11.4 | |||||||
| NCBI | gene | 183756 | |||||||
| RefSeq | protein | NM_078408.1 | |||||||
| TrEMBL | UniProtAcc | P91183 | |||||||
| UniProt_GCRP | UniProtAcc | P91183 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:58 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Allele | WBVar01499519 | ||||||||
| WBVar01499710 | |||||||||
| WBVar01228107 | |||||||||
| WBVar01228108 | |||||||||
| WBVar01228109 | |||||||||
| WBVar01988287 | |||||||||
| WBVar01488532 | |||||||||
| WBVar01498960 | |||||||||
| WBVar00530961 | |||||||||
| WBVar01500067 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog | chrIII_pilon.g6752 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
| chrII_pilon.g6644 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| chrIV_pilon.g10303 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| chrIV_pilon.g12311 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| chrIV_pilon.g12449 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| chrIV_pilon.g12656 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| chrIV_pilon.g9784 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| chrX_pilon.g18284 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| chrX_pilon.g19039 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Paralog | WBGene00014216 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
| WBGene00021821 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Enriched in OLL and PVD based on microarray studies. Is affected by several genes including eat-2; mex-1; and dpy-21 based on RNA-seq studies. Is affected by aldicarb and Rifampin based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: GETHR pentapeptide repeat (5 copies) and GETHR pentapeptide repeat. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C53C11.4 | |||||||
| Corresponding_transcript | C53C11.4.1 | ||||||||
| Associated_feature | WBsf1008866 | ||||||||
| WBsf1024997 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00012356 | Inferred_automatically | RNAi_primary | |||||
| Expr_pattern | Expr1022843 | ||||||||
| Expr1147050 | |||||||||
| Drives_construct | WBCnstr00027717 | ||||||||
| Construct_product | WBCnstr00027717 | ||||||||
| Microarray_results | SMD_C53C11.4 | ||||||||
| Aff_C53C11.4 | |||||||||
| GPL14144_C53C11.4_44-103_0.864_1_A | |||||||||
| GPL3518_CE04267 | |||||||||
| GPL8304_CE_WBGene00016901_A | |||||||||
| GPL8304_CE_WBGene00016901_B | |||||||||
| GPL8673_C53C11_4P00063 | |||||||||
| GPL8673_C53C11_4P00102 | |||||||||
| Expression_cluster (14) | |||||||||
| Interaction (45) | |||||||||
| Map_info | Positive | Positive_clone | C53C11 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Interpolated_map_position | X | 24.0878 | |||||||
| Method | Gene |
