WormBase Tree Display for Gene: WBGene00016837
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WBGene00016837 | SMap | S_parent | Sequence | C50F2 | ||
---|---|---|---|---|---|---|
Identity (6) | ||||||
Gene_info | Biotype | SO:0001217 | ||||
Gene_class | syf | |||||
Allele (42) | ||||||
Strain | WBStrain00001905 | |||||
WBStrain00001495 | ||||||
WBStrain00037603 | ||||||
RNASeq_FPKM (74) | ||||||
GO_annotation | 00050193 | |||||
00050194 | ||||||
00050195 | ||||||
00050196 | ||||||
00050197 | ||||||
00050198 | ||||||
00050199 | ||||||
00050200 | ||||||
00122366 | ||||||
00122367 | ||||||
Contained_in_operon | CEOP1128 | |||||
Ortholog (38) | ||||||
Paralog | WBGene00013343 | Caenorhabditis elegans | From_analysis | Panther | ||
WormBase-Compara | ||||||
WBGene00019762 | Caenorhabditis elegans | From_analysis | Panther | |||
WormBase-Compara | ||||||
Structured_description | Automated_description | Predicted to be involved in generation of catalytic spliceosome for first transesterification step. Predicted to be part of Prp19 complex; U2-type catalytic step 2 spliceosome; and post-mRNA release spliceosomal complex. Expressed in head and tail. Is an ortholog of human XAB2 (XPA binding protein 2). | Paper_evidence | WBPaper00065943 | ||
Curator_confirmed | WBPerson324 | |||||
WBPerson37462 | ||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||
Date_last_updated | 29 Nov 2023 00:00:00 | |||||
Molecular_info | Corresponding_CDS | C50F2.3 | ||||
Corresponding_transcript | C50F2.3.1 | |||||
Other_sequence (75) | ||||||
Associated_feature | WBsf643165 | |||||
WBsf643166 | ||||||
WBsf656133 | ||||||
WBsf217454 | ||||||
Experimental_info | RNAi_result (39) | |||||
Expr_pattern | Chronogram839 | |||||
Expr5557 | ||||||
Expr5558 | ||||||
Expr1026971 | ||||||
Expr1037224 | ||||||
Expr1146897 | ||||||
Expr2017174 | ||||||
Expr2035310 | ||||||
Drives_construct | WBCnstr00002352 | |||||
WBCnstr00004320 | ||||||
WBCnstr00027766 | ||||||
Construct_product | WBCnstr00027766 | |||||
Microarray_results (19) | ||||||
Expression_cluster (111) | ||||||
Interaction (204) | ||||||
Map_info | Map | I | Position | -1.95124 | ||
Positive | Positive_clone | C50F2 | Inferred_automatically | From sequence, transcript, pseudogene data | ||
Pseudo_map_position | ||||||
Reference | WBPaper00038491 | |||||
WBPaper00048493 | ||||||
WBPaper00055090 | ||||||
WBPaper00064339 | ||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||
Method | Gene |