WormBase Tree Display for Gene: WBGene00016807
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WBGene00016807 | SMap | S_parent | Sequence | C50D2 | |||
---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||
Name | CGC_name | txt-1 | Person_evidence | WBPerson19237 | |||
Sequence_name | C50D2.3 | ||||||
Molecular_name | C50D2.3 | ||||||
C50D2.3.1 | |||||||
CE08888 | |||||||
Other_name | CELE_C50D2.3 | Accession_evidence | NDB | BX284602 | |||
Public_name | txt-1 | ||||||
DB_info | Database | AceView | gene | 2A397 | |||
WormQTL | gene | WBGene00016807 | |||||
WormFlux | gene | WBGene00016807 | |||||
NDB | locus_tag | CELE_C50D2.3 | |||||
Panther | gene | CAEEL|WormBase=WBGene00016807|UniProtKB=O44797 | |||||
family | PTHR31327 | ||||||
NCBI | gene | 183651 | |||||
RefSeq | protein | NM_061260.3 | |||||
TREEFAM | TREEFAM_ID | TF319103 | |||||
TrEMBL | UniProtAcc | O44797 | |||||
UniProt_GCRP | UniProtAcc | O44797 | |||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (2) | ||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | txt | ||||||
Allele (21) | |||||||
Strain | WBStrain00051496 | ||||||
RNASeq_FPKM (74) | |||||||
Ortholog (20) | |||||||
Paralog (14) | |||||||
Structured_description | Automated_description | Enriched in germ line; serotonergic neurons; and in male based on RNA-seq; tiling array; and single-cell RNA-seq studies. Is affected by several genes including daf-2; skn-1; and dpy-10 based on microarray and RNA-seq studies. Is affected by sixteen chemicals including methylmercuric chloride; manganese chloride; and D-glucose based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: Uncharacterized protein T15H9.4-like; PDZ superfamily; and PDZ domain. | Paper_evidence | WBPaper00065943 | |||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | C50D2.3 | |||||
Corresponding_transcript | C50D2.3.1 | ||||||
Other_sequence | CJC12790_1 | ||||||
Associated_feature | WBsf1011345 | ||||||
WBsf220722 | |||||||
Experimental_info | RNAi_result | WBRNAi00042885 | Inferred_automatically | RNAi_primary | |||
WBRNAi00060471 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00030023 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00060472 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00012204 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00060469 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00060470 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr3620 | ||||||
Expr1018556 | |||||||
Expr1146861 | |||||||
Expr2001811 | |||||||
Expr2020037 | |||||||
Drives_construct | WBCnstr00027790 | ||||||
Construct_product | WBCnstr00011545 | ||||||
WBCnstr00027790 | |||||||
Microarray_results (17) | |||||||
Expression_cluster (118) | |||||||
Interaction (29) | |||||||
Map_info | Map | II | Position | -16.1401 | |||
Positive | Positive_clone | C50D2 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Reference | WBPaper00065013 | ||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |