WormBase Tree Display for Gene: WBGene00016772
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| WBGene00016772 | SMap | S_parent | Sequence | C49D10 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | nhr-166 | Person_evidence | WBPerson600 | |||||
| Sequence_name | C49D10.2 | ||||||||
| Molecular_name | C49D10.2 | ||||||||
| C49D10.2.1 | |||||||||
| CE08843 | |||||||||
| Other_name | CELE_C49D10.2 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | nhr-166 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:57 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 22 Jul 2005 10:29:12 | WBPerson2970 | Name_change | CGC_name | nhr-166 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | nhr | ||||||||
| Allele (112) | |||||||||
| Strain | WBStrain00036538 | ||||||||
| WBStrain00036539 | |||||||||
| WBStrain00036685 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00028352 | ||||||||
| 00028353 | |||||||||
| 00028354 | |||||||||
| 00028355 | |||||||||
| 00122315 | |||||||||
| 00122316 | |||||||||
| 00122317 | |||||||||
| 00122318 | |||||||||
| Ortholog (25) | |||||||||
| Paralog (218) | |||||||||
| Structured_description | Automated_description | Predicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus. Expressed in head neurons. Human ortholog(s) of this gene implicated in cholestasis (multiple); liver disease (multiple); and non-alcoholic steatohepatitis. Is an ortholog of human NR1H4 (nuclear receptor subfamily 1 group H member 4) and NR1I3 (nuclear receptor subfamily 1 group I member 3). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:12236 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:7967) | ||||
| DOID:0070225 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:7967) | ||||||
| DOID:13619 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:7967) | ||||||
| DOID:0080547 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:7967) | ||||||
| DOID:684 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:7967) | ||||||
| Molecular_info | Corresponding_CDS | C49D10.2 | |||||||
| Corresponding_transcript | C49D10.2.1 | ||||||||
| Associated_feature | WBsf1011975 | ||||||||
| WBsf221055 | |||||||||
| WBsf221056 | |||||||||
| Transcription_factor | WBTranscriptionFactor000974 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00115878 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00012139 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00115770 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00029979 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00042799 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr7482 | ||||||||
| Expr1018827 | |||||||||
| Expr1146780 | |||||||||
| Expr2014066 | |||||||||
| Expr2032306 | |||||||||
| Drives_construct | WBCnstr00012626 | ||||||||
| WBCnstr00027814 | |||||||||
| Construct_product | WBCnstr00027814 | ||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (38) | |||||||||
| Interaction (32) | |||||||||
| Map_info | Map | II | Position | -6.0317 | Error | 0.013177 | |||
| Positive | Positive_clone | C49D10 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 5354 | |||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00055090 | ||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
