WormBase Tree Display for Gene: WBGene00016739
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| WBGene00016739 | SMap | S_parent | Sequence | C48A7 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | pitr-1 | Person_evidence | WBPerson3240 | |||||
| Sequence_name | C48A7.2 | ||||||||
| Molecular_name | C48A7.2a | ||||||||
| C48A7.2a.1 | |||||||||
| CE20573 | |||||||||
| C48A7.2b | |||||||||
| CE49582 | |||||||||
| C48A7.2b.1 | |||||||||
| C48A7.2c | |||||||||
| Other_name | rme-10 | Person_evidence | WBPerson259 | ||||||
| CELE_C48A7.2 | Accession_evidence | NDB | BX284604 | ||||||
| Public_name | pitr-1 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:57 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 31 Aug 2012 11:56:39 | WBPerson2970 | Name_change | CGC_name | pitr-1 | ||||
| 3 | 03 Aug 2016 13:01:11 | WBPerson2970 | Event | Acquires_merge | WBGene00004379 | ||||
| Name_change | Other_name | rme-10 | |||||||
| Acquires_merge | WBGene00004379 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | pitr | ||||||||
| Allele (46) | |||||||||
| Legacy_information | [Grant BD] Brood size: 112 Endocytosis of YP170 GFP by oocytes strongly reduced. Abundant pseudocoelomic yolk. | ||||||||
| Strain | WBStrain00036768 | ||||||||
| WBStrain00055548 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00062097 | ||||||||
| 00062098 | |||||||||
| 00062099 | |||||||||
| 00062100 | |||||||||
| 00062101 | |||||||||
| 00062102 | |||||||||
| 00122276 | |||||||||
| 00122277 | |||||||||
| 00122278 | |||||||||
| Ortholog (42) | |||||||||
| Paralog | WBGene00007141 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00012285 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00015054 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00015055 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00017312 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Predicted to enable inorganic phosphate transmembrane transporter activity. Predicted to be involved in phosphate ion transmembrane transport. Predicted to be located in membrane. Expressed in several structures, including body wall musculature; hermaphrodite gonad; intestine; nerve ring; and pharynx. Human ortholog(s) of this gene implicated in basal ganglia calcification. Is an ortholog of human SLC20A1 (solute carrier family 20 member 1) and SLC20A2 (solute carrier family 20 member 2). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0060230 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:10947) | ||||
| Molecular_info | Corresponding_CDS | C48A7.2a | |||||||
| C48A7.2b | |||||||||
| Corresponding_transcript | C48A7.2c | ||||||||
| C48A7.2a.1 | |||||||||
| C48A7.2b.1 | |||||||||
| Other_sequence (74) | |||||||||
| Associated_feature (24) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00024851 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00042706 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00092154 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00012088 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00112289 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00001821 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00027232 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr12647 | ||||||||
| Expr13000 | |||||||||
| Expr13001 | |||||||||
| Expr1013965 | |||||||||
| Expr1037187 | |||||||||
| Expr1146698 | |||||||||
| Expr2014937 | |||||||||
| Expr2033172 | |||||||||
| Drives_construct | WBCnstr00006140 | ||||||||
| WBCnstr00027840 | |||||||||
| WBCnstr00038134 | |||||||||
| Construct_product | WBCnstr00023153 | ||||||||
| WBCnstr00023154 | |||||||||
| WBCnstr00027840 | |||||||||
| Microarray_results (22) | |||||||||
| Expression_cluster (136) | |||||||||
| Interaction | WBInteraction000520009 | ||||||||
| WBInteraction000580975 | |||||||||
| Anatomy_function | WBbtf0419 | ||||||||
| Map_info | Map | IV | Position | 3.33349 | |||||
| Positive | Positive_clone | C48A7 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 3825 | |||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00027076 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00049853 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
