WormBase Tree Display for Gene: WBGene00016554
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WBGene00016554 | SMap | S_parent | Sequence | C40D2 | |||
---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||
Name | CGC_name | math-19 | Person_evidence | WBPerson655 | |||
Sequence_name | C40D2.1 | ||||||
Molecular_name | C40D2.1 | ||||||
C40D2.1.1 | |||||||
CE51259 | |||||||
Other_name | CELE_C40D2.1 | Accession_evidence | NDB | BX284602 | |||
Public_name | math-19 | ||||||
DB_info | Database | AceView | gene | 2C289 | |||
WormQTL | gene | WBGene00016554 | |||||
SignaLink | protein | WBGene00016554 | |||||
WormFlux | gene | WBGene00016554 | |||||
NDB | locus_tag | CELE_C40D2.1 | |||||
NCBI | gene | 183362 | |||||
RefSeq | protein | NM_061746.4 | |||||
TREEFAM | TREEFAM_ID | TF322050 | |||||
TrEMBL | UniProtAcc | O76559 | |||||
UniProt_GCRP | UniProtAcc | O76559 | |||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (2) | ||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | math | ||||||
Allele (39) | |||||||
RNASeq_FPKM (74) | |||||||
Ortholog | WBGene00159386 | Caenorhabditis brenneri | From_analysis | OMA | |||
WBGene00154588 | Caenorhabditis brenneri | From_analysis | TreeFam | ||||
WBGene00143314 | Caenorhabditis brenneri | From_analysis | WormBase-Compara | ||||
Csp11.Scaffold630.g19300 | Caenorhabditis tropicalis | From_analysis | WormBase-Compara | ||||
Csp11.Scaffold630.g19304 | Caenorhabditis tropicalis | From_analysis | WormBase-Compara | ||||
chrII_pilon.g3548 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
chrII_pilon.g3551 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
Paralog (83) | |||||||
Structured_description | Automated_description | Is affected by several genes including daf-16; daf-2; and let-60 based on microarray; tiling array; and RNA-seq studies. Is affected by dafa#1 based on microarray studies. Is predicted to encode a protein with the following domains: MATH/TRAF domain; MATH domain; and TRAF-like. | Paper_evidence | WBPaper00065943 | |||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | C40D2.1 | |||||
Corresponding_CDS_history | C40D2.1:wp252 | ||||||
Corresponding_transcript | C40D2.1.1 | ||||||
Experimental_info | RNAi_result | WBRNAi00021930 | Inferred_automatically | RNAi_primary | |||
WBRNAi00042253 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00011814 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr1146244 | ||||||
Microarray_results (13) | |||||||
Expression_cluster (24) | |||||||
SAGE_tag | SAGE:gaatgaataa | Strand | Sense | ||||
Unambiguously_mapped | |||||||
Map_info | Map | II | Position | -14.0445 | Error | 0.003613 | |
Positive | Positive_clone | C40D2 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |