WormBase Tree Display for Gene: WBGene00016527
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WBGene00016527 | SMap | S_parent | Sequence | C39B5 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | fbxa-47 | Person_evidence | WBPerson655 | |||||
Sequence_name | C39B5.9 | ||||||||
Molecular_name | C39B5.9 | ||||||||
C39B5.9.1 | |||||||||
CE29219 | |||||||||
Other_name | CELE_C39B5.9 | Accession_evidence | NDB | BX284603 | |||||
Public_name | fbxa-47 | ||||||||
DB_info | Database | AceView | gene | 3D318 | |||||
WormQTL | gene | WBGene00016527 | |||||||
WormFlux | gene | WBGene00016527 | |||||||
NDB | locus_tag | CELE_C39B5.9 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00016527|UniProtKB=Q9N5W8 | |||||||
family | PTHR23015 | ||||||||
NCBI | gene | 183328 | |||||||
RefSeq | protein | NM_065116.1 | |||||||
TREEFAM | TREEFAM_ID | TF322006 | |||||||
TrEMBL | UniProtAcc | Q9N5W8 | |||||||
UniProt_GCRP | UniProtAcc | Q9N5W8 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 28 May 2004 13:30:57 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
2 | 12 Dec 2005 15:18:56 | WBPerson2970 | Name_change | CGC_name | fbxa-47 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | fbxa | ||||||||
Allele (74) | |||||||||
RNASeq_FPKM (74) | |||||||||
Ortholog (42) | |||||||||
Paralog (225) | |||||||||
Structured_description | Concise_description | This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction. | Paper_evidence | WBPaper00012854 | |||||
Curator_confirmed | WBPerson567 | ||||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
Automated_description | Enriched in OLL; PVD; and sensory neurons based on microarray and RNA-seq studies. Is affected by several genes including eat-2; clk-1; and tph-1 based on microarray and RNA-seq studies. Is affected by eight chemicals including methylmercuric chloride; metformin; and Psoralens based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: F-box domain; Domain of unknown function DUF38/FTH, Caenorhabditis species; FTH domain; and F-box A protein FB224. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | C39B5.9 | |||||||
Corresponding_transcript | C39B5.9.1 | ||||||||
Other_sequence | MJ02160 | ||||||||
BM01165 | |||||||||
Associated_feature | WBsf226264 | ||||||||
Experimental_info | RNAi_result | WBRNAi00029678 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00011770 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00042201 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1028229 | ||||||||
Expr1146192 | |||||||||
Expr2011549 | |||||||||
Expr2029787 | |||||||||
Drives_construct | WBCnstr00027999 | ||||||||
Construct_product | WBCnstr00027999 | ||||||||
Microarray_results (14) | |||||||||
Expression_cluster (69) | |||||||||
Map_info | Map | III | Position | -14.8832 | Error | 0.006266 | |||
Positive | Positive_clone | C39B5 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference | WBPaper00012854 | ||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |