WormBase Tree Display for Gene: WBGene00016526
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WBGene00016526 | SMap | S_parent | Sequence | C39B5 | ||||||
---|---|---|---|---|---|---|---|---|---|---|
Identity | Version | 3 | ||||||||
Name | CGC_name | fbxa-8 | Person_evidence | WBPerson655 | ||||||
Sequence_name | C39B5.8 | |||||||||
Molecular_name | C39B5.8 | |||||||||
Other_name | CELE_C39B5.8 | Accession_evidence | NDB | BX284603 | ||||||
Public_name | fbxa-8 | |||||||||
DB_info | Database | AceView | gene | 3D304 | ||||||
WormQTL | gene | WBGene00016526 | ||||||||
WormFlux | gene | WBGene00016526 | ||||||||
NDB | locus_tag | CELE_C39B5.8 | ||||||||
NCBI | gene | 183327 | ||||||||
Species | Caenorhabditis elegans | |||||||||
History | Version_change | 1 | 28 May 2004 13:30:57 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | |||
2 | 12 Dec 2005 15:18:56 | WBPerson2970 | Name_change | CGC_name | fbxa-8 | |||||
3 | 18 Feb 2016 15:25:02 | WBPerson1983 | Event | Changed_class | CDS | Pseudogene | ||||
Status | Live | |||||||||
Gene_info | Biotype | SO:0000336 | ||||||||
Gene_class | fbxa | |||||||||
Allele (59) | ||||||||||
RNASeq_FPKM (74) | ||||||||||
Ortholog (19) | ||||||||||
Paralog (147) | ||||||||||
Structured_description | Concise_description | This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction. | Paper_evidence | WBPaper00012854 | ||||||
Curator_confirmed | WBPerson567 | |||||||||
Date_last_updated | 17 Jun 2004 00:00:00 | |||||||||
Automated_description | Is affected by several genes including eat-2; sir-2.1; and nhr-49 based on microarray and RNA-seq studies. Is affected by six chemicals including Rifampin; allantoin; and Sirolimus based on RNA-seq and microarray studies. | Paper_evidence | WBPaper00065943 | |||||||
Curator_confirmed | WBPerson324 | |||||||||
WBPerson37462 | ||||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | |||||||||
Molecular_info | Corresponding_CDS_history | C39B5.8:wp252 | ||||||||
Corresponding_pseudogene | C39B5.8 | |||||||||
Other_sequence | FC817471.1 | |||||||||
Dviv_isotig24801 | ||||||||||
SRC08321 | ||||||||||
FC811886.1 | ||||||||||
Associated_feature | WBsf991484 | |||||||||
WBsf991485 | ||||||||||
WBsf1014381 | ||||||||||
WBsf1014382 | ||||||||||
Experimental_info | Expr_pattern (2) | |||||||||
Microarray_results (12) | ||||||||||
Expression_cluster (50) | ||||||||||
Map_info | Map | III | Position | -14.9947 | Error | 0.027251 | ||||
Positive | Positive_clone | C39B5 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||||
Pseudo_map_position | ||||||||||
Reference | WBPaper00012854 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
Method | Gene |