WormBase Tree Display for Gene: WBGene00016486

WBGene00016486 SMap: S_parent: Sequence: C36C9
  Identity: Version: 2
    Name: CGC_name: fbxa-170 Person_evidence: WBPerson655
      Sequence_name: C36C9.3
      Molecular_name: C36C9.3
        C36C9.3.1
        CE19722
      Other_name: CELE_C36C9.3 Accession_evidence: NDB BX284606
      Public_name: fbxa-170
    DB_info: Database: AceView gene XC288
        WormQTL gene WBGene00016486
        WormFlux gene WBGene00016486
        NDB locus_tag CELE_C36C9.3
        Panther gene CAEEL|WormBase=WBGene00016486|UniProtKB=Q9TZK9
          family PTHR23015
        NCBI gene 183273
        RefSeq protein NM_075908.4
        TREEFAM TREEFAM_ID TF321294
        TrEMBL UniProtAcc Q9TZK9
        UniProt_GCRP UniProtAcc Q9TZK9
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:30:57 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 01 Mar 2007 11:55:18 WBPerson2970 Name_change: CGC_name: fbxa-170
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: fbxa
    Allele (40)
    RNASeq_FPKM (74)
    Ortholog (22)
    Paralog (220)
    Structured_description: Concise_description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction. Paper_evidence: WBPaper00012854
          Curator_confirmed: WBPerson567
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Enriched in Y cell and germ line based on RNA-seq and single-cell RNA-seq studies. Is affected by several genes including daf-2; dpy-10; and hsf-1 based on microarray; tiling array; and RNA-seq studies. Is affected by fourteen chemicals including bisphenol A; Alovudine; and Zidovudine based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: Mos1 transposase, HTH domain; FTH domain; HTH domain in Mos1 transposase; F-box domain; Domain of unknown function DUF38/FTH, Caenorhabditis species; and F-box A protein FB224. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: C36C9.3
    Corresponding_transcript: C36C9.3.1
    Other_sequence: Tcir_isotig08306
    Associated_feature: WBsf1004126
      WBsf1004127
      WBsf1022332
      WBsf1022333
      WBsf237024
  Experimental_info: RNAi_result: WBRNAi00011700 Inferred_automatically: RNAi_primary
      WBRNAi00062151 Inferred_automatically: RNAi_primary
      WBRNAi00029613 Inferred_automatically: RNAi_primary
      WBRNAi00042067 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1015605
      Expr1037067
      Expr1146065
      Expr2011496
      Expr2029733
    Drives_construct: WBCnstr00028028
    Construct_product: WBCnstr00028028
    Microarray_results (17)
    Expression_cluster (155)
    Interaction (29)
  Map_info: Map: X Position: -17.7916
    Positive: Positive_clone: C36C9 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00012854
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene