WormBase Tree Display for Gene: WBGene00016386

WBGene00016386 SMap: S_parent: Sequence: C34B2
  Identity: Version: 2
    Name: CGC_name: tag-272
      Sequence_name: C34B2.1
      Molecular_name: C34B2.1a
        C34B2.1a.1
        CE36631
        C34B2.1b
        CE46997
        C34B2.1b.1
      Other_name: CELE_C34B2.1 Accession_evidence: NDB BX284601
      Public_name: tag-272
    DB_info: Database: AceView gene 1L265
        WormQTL gene WBGene00016386
        WormFlux gene WBGene00016386
        NDB locus_tag CELE_C34B2.1
        NCBI gene 183191
        RefSeq protein NM_001264538.1
            NM_001264537.3
        TrEMBL UniProtAcc O44957
            H1ZUV5
        UniProt_GCRP UniProtAcc O44957
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:30:57 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 22 Apr 2005 11:55:18 WBPerson2970 Name_change: CGC_name: tag-272
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: tag
    Allele (40)
    Strain: WBStrain00036093
    RNASeq_FPKM (74)
    Ortholog: WBGene00033699 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
      CSP28.g16729 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g23572 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g7242 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP39.g5986 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g570 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      chrI_pilon.g2115 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00119293 Caenorhabditis japonica From_analysis: WormBase-Compara
    Paralog: WBGene00016396 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Automated_description: Enriched in GLR; head mesodermal cell; pharyngeal cell; and sensory neurons based on RNA-seq and single-cell RNA-seq studies. Is affected by several genes including daf-16; daf-12; and rrf-3 based on tiling array; RNA-seq; and microarray studies. Is affected by seven chemicals including Psoralens; allantoin; and metformin based on RNA-seq and microarray studies. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: C34B2.1a
      C34B2.1b
    Corresponding_CDS_history: C34B2.1:wp122
    Corresponding_transcript: C34B2.1a.1
      C34B2.1b.1
    Associated_feature: WBsf643707
      WBsf985061
  Experimental_info: RNAi_result: WBRNAi00041822 Inferred_automatically: RNAi_primary
      WBRNAi00112613 Inferred_automatically: RNAi_primary
      WBRNAi00003069 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1013505
      Expr1145836
      Expr2017255
      Expr2035391
    Microarray_results (18)
    Expression_cluster (74)
    SAGE_tag: SAGE:gatgagggaa Strand: Sense
        Unambiguously_mapped
      SAGE:gatgagggaattacgag Strand: Sense
        Unambiguously_mapped
      SAGE:taatcgaaaatgtccga Strand: Antisense
      SAGE:taatcgaaaa Strand: Antisense
      SAGE:cgcgcctttt Strand: Antisense
      SAGE:agctcaaaaa Strand: Antisense
    Interaction (11)
  Map_info: Map: I Position: 5.06117 Error: 0.000281
    Positive: Positive_clone: C34B2 Inferred_automatically: From sequence, transcript, pseudogene data
    Mapping_data: Multi_point: 5135
        5267
    Pseudo_map_position
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene