WormBase Tree Display for Gene: WBGene00016120
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| WBGene00016120 | SMap | S_parent | Sequence | C25H3 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | Sequence_name | C25H3.11 | |||||||
| Molecular_name (12) | |||||||||
| Other_name | CELE_C25H3.11 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | C25H3.11 | ||||||||
| DB_info | Database | AceView | gene | 2F972 | |||||
| WormQTL | gene | WBGene00016120 | |||||||
| WormFlux | gene | WBGene00016120 | |||||||
| NDB | locus_tag | CELE_C25H3.11 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00016120|UniProtKB=A0A2K5ATR5 | |||||||
| family | PTHR16166 | ||||||||
| NCBI | gene | 173962 | |||||||
| RefSeq | protein | NM_001361860.2 | |||||||
| NM_001361857.4 | |||||||||
| NM_001361858.3 | |||||||||
| NM_001381432.1 | |||||||||
| TrEMBL | UniProtAcc | A0A2K5ATQ8 | |||||||
| A0A2K5ATR5 | |||||||||
| A0A2K5ATQ3 | |||||||||
| A0A2K5ATR9 | |||||||||
| UniProt_GCRP | UniProtAcc | A0A2K5ATR5 | |||||||
| OMIM | gene | 608877 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:57 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 11 Jan 2018 16:44:22 | WBPerson1983 | Event | Acquires_merge | WBGene00016117 | ||||
| Acquires_merge | WBGene00016117 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Allele (247) | |||||||||
| Strain | WBStrain00037022 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00003075 | ||||||||
| 00003076 | |||||||||
| 00003077 | |||||||||
| 00003078 | |||||||||
| 00003079 | |||||||||
| 00003080 | |||||||||
| Contained_in_operon | CEOP2728 | ||||||||
| Ortholog (59) | |||||||||
| Paralog | WBGene00011629 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Predicted to enable glycosyltransferase activity and metal ion binding activity. Predicted to be involved in mitochondrion organization; protein retention in Golgi apparatus; and protein targeting to vacuole. Predicted to be extrinsic component of membrane. Human ortholog(s) of this gene implicated in autosomal recessive spinocerebellar ataxia 4. Is an ortholog of human VPS13D (vacuolar protein sorting 13 homolog D). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0111611 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:23595) | ||||
| Molecular_info | Corresponding_CDS | C25H3.11a | |||||||
| C25H3.11b | |||||||||
| C25H3.11c | |||||||||
| C25H3.11d | |||||||||
| Corresponding_CDS_history | C25H3.11:wp263 | ||||||||
| Corresponding_transcript | C25H3.11a.1 | ||||||||
| C25H3.11b.1 | |||||||||
| C25H3.11c.1 | |||||||||
| C25H3.11d.1 | |||||||||
| Other_sequence (21) | |||||||||
| Associated_feature | WBsf650078 | ||||||||
| WBsf650079 | |||||||||
| WBsf665548 | |||||||||
| WBsf665549 | |||||||||
| WBsf987929 | |||||||||
| WBsf1012251 | |||||||||
| Experimental_info | RNAi_result (11) | ||||||||
| Expr_pattern | Expr1010545 | ||||||||
| Expr1012258 | |||||||||
| Expr1036886 | |||||||||
| Expr1036888 | |||||||||
| Expr1145261 | |||||||||
| Expr1145272 | |||||||||
| Expr2001108 | |||||||||
| Expr2001117 | |||||||||
| Expr2019329 | |||||||||
| Expr2019338 | |||||||||
| Drives_construct | WBCnstr00028311 | ||||||||
| Construct_product | WBCnstr00028311 | ||||||||
| Microarray_results (36) | |||||||||
| Expression_cluster (138) | |||||||||
| Interaction | WBInteraction000541524 | ||||||||
| WBInteraction000556439 | |||||||||
| WBInteraction000583387 | |||||||||
| Map_info | Positive | Positive_clone | C25H3 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Interpolated_map_position | II | -0.970698 | |||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00046507 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00063999 | |||||||||
| Method | Gene |
