WormBase Tree Display for Gene: WBGene00015677
expand all nodes | collapse all nodes | view schema
WBGene00015677 | SMap | S_parent | Sequence | C10F3 | ||
---|---|---|---|---|---|---|
Identity (6) | ||||||
Gene_info | Biotype | SO:0001217 | ||||
Gene_class | cpg | |||||
Allele (57) | ||||||
Strain | WBStrain00033133 | |||||
RNASeq_FPKM (74) | ||||||
Ortholog (24) | ||||||
Paralog | WBGene00007580 | |||||
WBGene00017548 | Caenorhabditis elegans | From_analysis | Panther | |||
Structured_description | Concise_description | cpg-4 encodes a large (782-residue), unfamiliar, putatively secretedprotein with a C-terminal low-complexity domain; CPG-4 has 35 potentialchondroitin attachment sites, mostly in its C-terminal half, 4 of whichhave been verified by mass spectrometry; CPG-4 has no obvious functionin mass RNAi assays. | Paper_evidence | WBPaper00027679 | ||
Curator_confirmed | WBPerson567 | |||||
Date_last_updated | 02 May 2007 00:00:00 | |||||
Automated_description | Enriched in several structures, including RIH; amphid neurons; cholinergic neurons; germ line; and intestinal muscle based on tiling array; RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including daf-2; dpy-10; and daf-12 based on microarray; tiling array; proteomic; and RNA-seq studies. Is affected by thirteen chemicals including manganese chloride; Alovudine; and stavudine based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domain: Chondroitin proteoglycan 4. | Paper_evidence | WBPaper00065943 | |||
Curator_confirmed | WBPerson324 | |||||
WBPerson37462 | ||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||
Date_last_updated | 29 Nov 2023 00:00:00 | |||||
Molecular_info | Corresponding_CDS | C10F3.1 | ||||
Corresponding_CDS_history | C10F3.1:wp90 | |||||
C10F3.1:wp106 | ||||||
Corresponding_transcript | C10F3.1.1 | |||||
Other_sequence | CRC04535_1 | |||||
CBC00506_1 | ||||||
CR07091 | ||||||
JI176018.1 | ||||||
CRC08897_1 | ||||||
CR01941 | ||||||
Associated_feature | WBsf646846 | |||||
WBsf977426 | ||||||
WBsf977427 | ||||||
WBsf977428 | ||||||
WBsf1000138 | ||||||
WBsf1019718 | ||||||
WBsf231825 | ||||||
Experimental_info | RNAi_result | WBRNAi00010599 | Inferred_automatically | RNAi_primary | ||
WBRNAi00028780 | Inferred_automatically | RNAi_primary | ||||
WBRNAi00040300 | Inferred_automatically | RNAi_primary | ||||
Expr_pattern | Expr1026842 | |||||
Expr1036709 | ||||||
Expr1144374 | ||||||
Expr2010485 | ||||||
Expr2028725 | ||||||
Drives_construct | WBCnstr00028662 | |||||
Construct_product | WBCnstr00028662 | |||||
Microarray_results (20) | ||||||
Expression_cluster (171) | ||||||
Interaction | WBInteraction000395901 | |||||
Map_info (3) | ||||||
Reference | WBPaper00027679 | |||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||
Method | Gene |