WormBase Tree Display for Gene: WBGene00015520
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| WBGene00015520 | SMap | S_parent | Sequence | C06E1 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | fip-3 | Person_evidence | WBPerson168 | |||||
| Sequence_name | C06E1.5 | ||||||||
| Molecular_name | C06E1.5 | ||||||||
| C06E1.5.1 | |||||||||
| CE00060 | |||||||||
| Other_name | CELE_C06E1.5 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | fip-3 | ||||||||
| DB_info | Database | AceView | gene | 3J678 | |||||
| WormQTL | gene | WBGene00015520 | |||||||
| WormFlux | gene | WBGene00015520 | |||||||
| NDB | locus_tag | CELE_C06E1.5 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00015520|UniProtKB=P34300 | |||||||
| family | PTHR39380 | ||||||||
| NCBI | gene | 54161878 | |||||||
| RefSeq | protein | NM_001379839.1 | |||||||
| SwissProt | UniProtAcc | P34300 | |||||||
| TREEFAM | TREEFAM_ID | TF322421 | |||||||
| UniProt_GCRP | UniProtAcc | P34300 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:56 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 03 Apr 2007 10:48:52 | WBPerson2970 | Name_change | CGC_name | fip-3 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | fip | ||||||||
| Allele | WBVar01500260 | ||||||||
| WBVar00068808 | |||||||||
| WBVar00403695 | |||||||||
| WBVar00403696 | |||||||||
| WBVar01499774 | |||||||||
| WBVar00845601 | |||||||||
| WBVar01499796 | |||||||||
| WBVar01499797 | |||||||||
| WBVar01657131 | |||||||||
| WBVar01667491 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog | WBGene00037688 | Caenorhabditis briggsae | From_analysis | OMA | |||||
| WBGene00034275 | Caenorhabditis briggsae | From_analysis | OMA | ||||||
| WBGene00181754 | Caenorhabditis japonica | From_analysis | Inparanoid_8 | ||||||
| WBGene00175551 | Caenorhabditis japonica | From_analysis | Inparanoid_8 | ||||||
| Paralog | WBGene00012965 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00015521 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00044451 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00044450 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| Structured_description | Automated_description | Enriched in germ line; rect_D; rect_VL; and rect_VR based on RNA-seq and single-cell RNA-seq studies. Is affected by several genes including eat-2; tph-1; and cat-2 based on microarray; tiling array; and RNA-seq studies. Is affected by twelve chemicals including Mercuric Chloride; Alovudine; and stavudine based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domain: Fungus-induced protein. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C06E1.5 | |||||||
| Corresponding_transcript | C06E1.5.1 | ||||||||
| Associated_feature | WBsf651291 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00039892 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00028574 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00005804 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00112650 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00006695 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00039891 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00010304 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1023227 | ||||||||
| Expr1143971 | |||||||||
| Expr2011765 | |||||||||
| Expr2030002 | |||||||||
| Drives_construct | WBCnstr00028783 | ||||||||
| Construct_product | WBCnstr00028783 | ||||||||
| Microarray_results (14) | |||||||||
| Expression_cluster (47) | |||||||||
| Interaction | WBInteraction000373222 | ||||||||
| WBInteraction000376143 | |||||||||
| WBInteraction000388574 | |||||||||
| WBInteraction000547169 | |||||||||
| Map_info | Map | III | Position | -0.240254 | Error | 0.002134 | |||
| Positive | Positive_clone | C06E1 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
