WormBase Tree Display for Gene: WBGene00015303
expand all nodes | collapse all nodes | view schema
| WBGene00015303 | SMap | S_parent | Sequence | CHROMOSOME_I | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | rga-6 | Paper_evidence | WBPaper00032386 | |||||
| Person_evidence | WBPerson351 | ||||||||
| Sequence_name | C01F4.2 | ||||||||
| Molecular_name | C01F4.2a | ||||||||
| C01F4.2a.1 | |||||||||
| CE30414 | |||||||||
| C01F4.2b | |||||||||
| CE33358 | |||||||||
| C01F4.2b.1 | |||||||||
| Other_name | CELE_C01F4.2 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | rga-6 | ||||||||
| DB_info | Database | AceView | gene | 1F420 | |||||
| WormQTL | gene | WBGene00015303 | |||||||
| WormFlux | gene | WBGene00015303 | |||||||
| NDB | locus_tag | CELE_C01F4.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00015303|UniProtKB=O01443 | |||||||
| family | PTHR12635 | ||||||||
| NCBI | gene | 172102 | |||||||
| RefSeq | protein | NM_059064.9 | |||||||
| NM_059065.7 | |||||||||
| TREEFAM | TREEFAM_ID | TF316710 | |||||||
| TrEMBL | UniProtAcc | H2KYD2 | |||||||
| O01443 | |||||||||
| UniProt_GCRP | UniProtAcc | O01443 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:55 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 21 Jul 2009 14:43:34 | WBPerson9133 | Name_change | CGC_name | rga-6 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | rga | ||||||||
| Allele (206) | |||||||||
| Strain | WBStrain00031952 | ||||||||
| Component_of_genotype | WBGenotype00000018 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00021516 | ||||||||
| 00121226 | |||||||||
| Ortholog (36) | |||||||||
| Structured_description | Automated_description | Involved in defense response to fungus. Used to study long QT syndrome. Is an ortholog of human ARHGAP36 (Rho GTPase activating protein 36) and ARHGAP6 (Rho GTPase activating protein 6). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Experimental_model | DOID:2843 | |||||||
| Models_disease_asserted | WBDOannot00000527 | ||||||||
| Molecular_info | Corresponding_CDS | C01F4.2a | |||||||
| C01F4.2b | |||||||||
| Corresponding_transcript | C01F4.2a.1 | ||||||||
| C01F4.2b.1 | |||||||||
| Other_sequence | ACC26688_1 | ||||||||
| Oden_isotig25725 | |||||||||
| FK807398.1 | |||||||||
| JO468664.1 | |||||||||
| Acan_isotig10569 | |||||||||
| Dviv_isotig23708 | |||||||||
| JI166361.1 | |||||||||
| FK805486.1 | |||||||||
| EY465272.1 | |||||||||
| Associated_feature (12) | |||||||||
| Experimental_info | RNAi_result (14) | ||||||||
| Expr_pattern | Chronogram1214 | ||||||||
| Chronogram1860 | |||||||||
| Expr5092 | |||||||||
| Expr5093 | |||||||||
| Expr1015598 | |||||||||
| Expr1036555 | |||||||||
| Expr1143422 | |||||||||
| Expr2015318 | |||||||||
| Expr2033552 | |||||||||
| Drives_construct | WBCnstr00003339 | ||||||||
| WBCnstr00004584 | |||||||||
| WBCnstr00028950 | |||||||||
| Construct_product | WBCnstr00028950 | ||||||||
| Microarray_results (32) | |||||||||
| Expression_cluster (141) | |||||||||
| Interaction (20) | |||||||||
| Map_info | Map | I | Position | -0.695886 | Error | 0.004683 | |||
| Positive | Positive_clone | C01F4 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00024082 | ||||||||
| WBPaper00038223 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00064105 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
