WormBase Tree Display for Gene: WBGene00013844

WBGene00013844 SMap: S_parent: Sequence: ZC47
  Identity: Version: 2
    Name: CGC_name: fbxa-50 Person_evidence: WBPerson655
      Sequence_name: ZC47.13
      Molecular_name: ZC47.13a
        ZC47.13a.1
        CE25668
        ZC47.13b
      Other_name: CELE_ZC47.13 Accession_evidence: NDB BX284603
      Public_name: fbxa-50
    DB_info: Database: WormQTL gene WBGene00013844
        WormFlux gene WBGene00013844
        NDB locus_tag CELE_ZC47.13
        Panther gene CAEEL|WormBase=WBGene00013844|UniProtKB=A4F334
          family PTHR23015
        NCBI gene 191064
        RefSeq protein NM_001083185.1
            NR_003439.1
        TREEFAM TREEFAM_ID TF322360
        TrEMBL UniProtAcc A4F334
        UniProt_GCRP UniProtAcc A4F334
        RNAcentral URSid URS00002F2893
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:55 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 12 Dec 2005 15:18:56 WBPerson2970 Name_change: CGC_name: fbxa-50
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: fbxa
    Allele (40)
    RNASeq_FPKM (74)
    Ortholog (27)
    Paralog (222)
    Structured_description: Concise_description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction. Paper_evidence: WBPaper00012854
          Curator_confirmed: WBPerson567
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Enriched in hypodermis based on tiling array studies. Is affected by several genes including daf-16; daf-2; and daf-12 based on tiling array; microarray; and RNA-seq studies. Is affected by thirteen chemicals including methylmercuric chloride; procyanidin; and Zidovudine based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: F-box domain; Domain of unknown function DUF38/FTH, Caenorhabditis species; FTH domain; and F-box A protein FB224. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: ZC47.13a
    Corresponding_CDS_history: ZC47.13:wp18
    Corresponding_transcript: ZC47.13b
      ZC47.13a.1
    Other_sequence: EX502909.1
      EX499901.1
      TSC07185_1
    Associated_feature: WBsf717053
  Experimental_info: RNAi_result: WBRNAi00006222 Inferred_automatically: RNAi_primary
      WBRNAi00058946 Inferred_automatically: RNAi_primary
      WBRNAi00021712 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1162383
      Expr2011552
      Expr2029790
    Drives_construct: WBCnstr00029510
    Construct_product: WBCnstr00029510
    Microarray_results (12)
    Expression_cluster (104)
    Interaction (25)
  Map_info: Map: III Position: -22.541 Error: 0.003023
    Positive: Positive_clone: ZC47 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00012854
    WBPaper00060474
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene