WormBase Tree Display for Gene: WBGene00013756

WBGene00013756 SMap: S_parent: Sequence: Y113G7B
  Identity: Version: 2
    Name: CGC_name: ftr-1 Person_evidence: WBPerson555
      Sequence_name: Y113G7B.4
      Molecular_name: Y113G7B.4
        Y113G7B.4.1
        CE23286
      Other_name: CELE_Y113G7B.4 Accession_evidence: NDB BX284605
      Public_name: ftr-1
    DB_info: Database: AceView gene 5U667
        WormQTL gene WBGene00013756
        WormFlux gene WBGene00013756
        NDB locus_tag CELE_Y113G7B.4
        Panther gene CAEEL|WormBase=WBGene00013756|UniProtKB=G5EC06
          family PTHR23015
        NCBI gene 180320
        RefSeq protein NM_075494.5
        TREEFAM TREEFAM_ID TF322006
        TrEMBL UniProtAcc G5EC06
        UniProt_GCRP UniProtAcc G5EC06
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:55 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 13 Oct 2005 11:04:21 WBPerson2970 Name_change: CGC_name: ftr-1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: ftr
    Allele (48)
    RNASeq_FPKM (74)
    Contained_in_operon: CEOP5504
    Ortholog (17)
    Paralog (225)
    Structured_description: Concise_description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction. Paper_evidence: WBPaper00012854
          Curator_confirmed: WBPerson567
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Enriched in several structures, including ABplpaapap; ABprpaapap; AFD; germ line; and head mesodermal cell based on tiling array; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including glp-1; hsf-1; and eat-2 based on microarray; tiling array; and RNA-seq studies. Is affected by ten chemicals including hydrogen sulfide; manganese chloride; and Zidovudine based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: F-box-like domain superfamily; FTH domain; F-box domain; Domain of unknown function DUF38/FTH, Caenorhabditis species; and F-box A protein FB224. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: Y113G7B.4
    Corresponding_transcript: Y113G7B.4.1
  Experimental_info: RNAi_result: WBRNAi00092184 Inferred_automatically: RNAi_primary
      WBRNAi00055406 Inferred_automatically: RNAi_primary
      WBRNAi00036592 Inferred_automatically: RNAi_primary
      WBRNAi00019898 Inferred_automatically: RNAi_primary
      WBRNAi00007307 Inferred_automatically: RNAi_primary
      WBRNAi00061914 Inferred_automatically: RNAi_primary
      WBRNAi00078378 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1028817
      Expr1158921
      Expr2011915
      Expr2030152
    Drives_construct: WBCnstr00029531
    Construct_product: WBCnstr00029531
    Microarray_results (16)
    Expression_cluster (102)
    Interaction (76)
  Map_info: Map: V Position: 24.9091 Error: 0.005147
    Positive: Positive_clone: Y113G7B Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00012854
    WBPaper00025000
    WBPaper00032144
    WBPaper00035887
    WBPaper00036690
    WBPaper00037881
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene