WormBase Tree Display for Gene: WBGene00013621
expand all nodes | collapse all nodes | view schema
| WBGene00013621 | SMap | S_parent | Sequence | Y102A5C | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | clec-239 | Person_evidence | WBPerson2531 | |||||
| Sequence_name | Y102A5C.16 | ||||||||
| Molecular_name | Y102A5C.16 | ||||||||
| Y102A5C.16.1 | |||||||||
| CE36216 | |||||||||
| Other_name | CELE_Y102A5C.16 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | clec-239 | ||||||||
| DB_info | Database | AceView | gene | 5R433 | |||||
| WormQTL | gene | WBGene00013621 | |||||||
| WormFlux | gene | WBGene00013621 | |||||||
| NDB | locus_tag | CELE_Y102A5C.16 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00013621|UniProtKB=Q9XX76 | |||||||
| family | PTHR23124 | ||||||||
| NCBI | gene | 190840 | |||||||
| RefSeq | protein | NM_074887.3 | |||||||
| TREEFAM | TREEFAM_ID | TF315870 | |||||||
| TrEMBL | UniProtAcc | Q9XX76 | |||||||
| UniProt_GCRP | UniProtAcc | Q9XX76 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:55 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 09 Oct 2007 15:40:27 | WBPerson2970 | Name_change | CGC_name | clec-239 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | clec | ||||||||
| Allele (105) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (94) | |||||||||
| Paralog (126) | |||||||||
| Structured_description | Automated_description | Enriched in AFD; NSM; and neurons based on tiling array and RNA-seq studies. Is affected by several genes including pmk-1; clk-1; and aak-2 based on tiling array; RNA-seq; and microarray studies. Is affected by Tunicamycin and multi-walled carbon nanotube based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: C-type lectin-like/link domain superfamily; Lectin C-type domain; C-type lectin-like; and C-type lectin fold. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y102A5C.16 | |||||||
| Corresponding_CDS_history | Y102A5C.16:wp114 | ||||||||
| Corresponding_transcript | Y102A5C.16.1 | ||||||||
| Other_sequence | NBC00400_1 | ||||||||
| FC820342.1 | |||||||||
| NB08016 | |||||||||
| NB07914 | |||||||||
| NBC00240_1 | |||||||||
| Associated_feature | WBsf1002575 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00019799 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00036449 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00055134 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1018684 | ||||||||
| Expr1158667 | |||||||||
| Microarray_results (15) | |||||||||
| Expression_cluster (52) | |||||||||
| Interaction (82) | |||||||||
| Map_info | Map | V | Position | 11.376 | Error | 0.000691 | |||
| Positive | Positive_clone | Y102A5C | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
