WormBase Tree Display for Gene: WBGene00013422
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WBGene00013422 | SMap | S_parent | Sequence | Y66A7AL | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | popl-5 | Person_evidence | WBPerson3778 | |||||
Sequence_name | Y66A7A.2 | ||||||||
Molecular_name | Y66A7A.2a | ||||||||
Y66A7A.2a.1 | |||||||||
CE22751 | |||||||||
Y66A7A.2b | |||||||||
CE46435 | |||||||||
Y66A7A.2b.1 | |||||||||
Other_name | CELE_Y66A7A.2 | Accession_evidence | NDB | BX284603 | |||||
Public_name | popl-5 | ||||||||
DB_info | Database | AceView | gene | 3M576 | |||||
WormQTL | gene | WBGene00013422 | |||||||
WormFlux | gene | WBGene00013422 | |||||||
NDB | locus_tag | CELE_Y66A7A.2 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00013422|UniProtKB=G5EF59 | |||||||
family | PTHR10993 | ||||||||
NCBI | gene | 176577 | |||||||
RefSeq | protein | NM_001268200.3 | |||||||
NM_001268199.4 | |||||||||
TREEFAM | TREEFAM_ID | TF317496 | |||||||
TrEMBL | UniProtAcc | G5EF59 | |||||||
G2HK18 | |||||||||
UniProt_GCRP | UniProtAcc | G5EF59 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 26 May 2004 16:54:54 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
2 | 21 Nov 2019 11:04:57 | WBPerson1983 | Name_change | CGC_name | popl-5 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | popl | ||||||||
Allele (34) | |||||||||
Strain | WBStrain00052062 | ||||||||
WBStrain00052060 | |||||||||
WBStrain00049380 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (14) | |||||||||
Contained_in_operon | CEOP3854 | ||||||||
CEOP3724 | |||||||||
Ortholog (28) | |||||||||
Paralog | WBGene00044130 | Caenorhabditis elegans | From_analysis | modENCODE_Pseudogenes | |||||
Structured_description | Concise_description | Y66A7A.2 encodes an ortholog of Pop5, a protein subunit shared by theendoribonucleases RNase MRP and RNAse P; RNAse MRP cleavesmitochondrial RNA in mitochondrial DNA synthesis, nucleolar pre-rRNA inribosome synthesis, and at least one mRNA (CLB2) involved in cell-cycleregulation; RNAse P cleaves tRNA precursors to produce their mature 5'end; Y66A7A.2 is evolutionarily ubiquitous among eukaryotes. | Paper_evidence | WBPaper00028606 | |||||
WBPaper00028843 | |||||||||
WBPaper00028845 | |||||||||
WBPaper00028925 | |||||||||
Curator_confirmed | WBPerson567 | ||||||||
Date_last_updated | 06 Jan 2007 00:00:00 | ||||||||
Automated_description | Predicted to enable ribonuclease P RNA binding activity and ribonuclease P activity. Predicted to be involved in rRNA processing and tRNA processing. Predicted to be located in nucleolus. Predicted to be part of nucleolar ribonuclease P complex and ribonuclease MRP complex. Is an ortholog of human POP5 (POP5 homolog, ribonuclease P/MRP subunit). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | Y66A7A.2a | |||||||
Y66A7A.2b | |||||||||
Corresponding_transcript | Y66A7A.2a.1 | ||||||||
Y66A7A.2b.1 | |||||||||
Other_sequence | MH10043 | ||||||||
FG350781.1 | |||||||||
CBC09807_1 | |||||||||
MH02731 | |||||||||
DN557937.1 | |||||||||
LSC00923_1 | |||||||||
CJC10938_1 | |||||||||
Associated_feature | WBsf994399 | ||||||||
WBsf227580 | |||||||||
Experimental_info | RNAi_result | WBRNAi00057919 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00057920 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00037712 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00021248 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1022404 | ||||||||
Expr1035995 | |||||||||
Expr1161354 | |||||||||
Expr2008171 | |||||||||
Expr2026411 | |||||||||
Microarray_results (19) | |||||||||
Expression_cluster (70) | |||||||||
Interaction | WBInteraction000179420 | ||||||||
WBInteraction000201683 | |||||||||
WBInteraction000242531 | |||||||||
WBInteraction000300297 | |||||||||
WBInteraction000354728 | |||||||||
WBInteraction000426670 | |||||||||
Map_info | Map | III | Position | 10.0179 | |||||
Positive | Positive_clone | Y66A7A | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference | WBPaper00038491 | ||||||||
WBPaper00055090 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |