WormBase Tree Display for Gene: WBGene00013408
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| WBGene00013408 | SMap | S_parent | Sequence | Y63D3A | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | fbxb-93 | Person_evidence | WBPerson655 | |||||
| Sequence_name | Y63D3A.9 | ||||||||
| Molecular_name | Y63D3A.9a | ||||||||
| Y63D3A.9a.1 | |||||||||
| CE52952 | |||||||||
| Y63D3A.9b | |||||||||
| CE52840 | |||||||||
| Y63D3A.9b.1 | |||||||||
| Other_name | CELE_Y63D3A.9 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | fbxb-93 | ||||||||
| DB_info | Database | AceView | gene | 1O672 | |||||
| WormQTL | gene | WBGene00013408 | |||||||
| WormFlux | gene | WBGene00013408 | |||||||
| NDB | locus_tag | CELE_Y63D3A.9 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00013408|UniProtKB=A0A3P6PCM3 | |||||||
| family | PTHR22899 | ||||||||
| NCBI | gene | 190471 | |||||||
| RefSeq | protein | NM_001368570.3 | |||||||
| NM_061055.5 | |||||||||
| TrEMBL | UniProtAcc | A0A3P6N605 | |||||||
| A0A3P6PCM3 | |||||||||
| UniProt_GCRP | UniProtAcc | A0A3P6PCM3 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:54 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 12 Dec 2005 17:22:20 | WBPerson2970 | Name_change | CGC_name | fbxb-93 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | fbxb | ||||||||
| Allele (25) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (18) | |||||||||
| Paralog (144) | |||||||||
| Structured_description | Concise_description | This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins. | Paper_evidence | WBPaper00012854 | |||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Enriched in several structures, including ABalaaaarl; ABalaaaarr; ABalpapaap; AFD; and excretory system based on single-cell RNA-seq and RNA-seq studies. Is affected by several genes including daf-2; eat-2; and sek-1 based on tiling array; microarray; and RNA-seq studies. Is affected by nine chemicals including Psoralens; allantoin; and metformin based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domain: F-box domain. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y63D3A.9a | |||||||
| Y63D3A.9b | |||||||||
| Corresponding_CDS_history | Y63D3A.9:wp268 | ||||||||
| Corresponding_transcript | Y63D3A.9a.1 | ||||||||
| Y63D3A.9b.1 | |||||||||
| Associated_feature | WBsf649736 | ||||||||
| WBsf649737 | |||||||||
| WBsf665095 | |||||||||
| WBsf665096 | |||||||||
| WBsf986039 | |||||||||
| WBsf986040 | |||||||||
| WBsf1011177 | |||||||||
| WBsf1011178 | |||||||||
| WBsf1011179 | |||||||||
| WBsf220570 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00004754 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00037693 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00066093 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00057884 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1014390 | ||||||||
| Expr1035988 | |||||||||
| Expr1161318 | |||||||||
| Expr2011693 | |||||||||
| Expr2029932 | |||||||||
| Drives_construct | WBCnstr00029650 | ||||||||
| Construct_product | WBCnstr00029650 | ||||||||
| Microarray_results (15) | |||||||||
| Expression_cluster (81) | |||||||||
| Interaction (77) | |||||||||
| Map_info | Map | I | Position | 23.0576 | Error | 0.007699 | |||
| Positive | Positive_clone | Y63D3A | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00012854 | ||||||||
| WBPaper00028984 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
