WormBase Tree Display for Gene: WBGene00012978
expand all nodes | collapse all nodes | view schema
| WBGene00012978 | SMap | S_parent | Sequence | Y48B6A | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | Sequence_name | Y48B6A.1 | |||||||
| Molecular_name | Y48B6A.1 | ||||||||
| Y48B6A.1.1 | |||||||||
| CE22116 | |||||||||
| Other_name | CELE_Y48B6A.1 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | Y48B6A.1 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:54 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Allele (89) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (18) | |||||||||
| Ortholog (38) | |||||||||
| Structured_description | Concise_description | Y48B6A.1 encodes an ortholog of human BOP1 (OMIM:610596, overexpressed in colon cancer) and S. cerevisiae ERB1; Y48B6A.1 may suppress tumorous growth in the germ line by ensuring robust larval germline proliferation; like PRO-1, -2, and -3, Y48B6A.1 is probably required for ribosome biogenesis, suggesting a link between biogenesis in the distal sheath and control of cell division in the germ line; however, BOP1 is also a phosphoprotein in mitotic spindles and required for normal chromosomal segregation, raising the possibility that Y48B6A.1 is multifunctional. | Paper_evidence | WBPaper00028280 | |||||
| WBPaper00028938 | |||||||||
| WBPaper00028939 | |||||||||
| WBPaper00028940 | |||||||||
| WBPaper00028941 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 23 Apr 2008 00:00:00 | ||||||||
| Automated_description | Predicted to enable ribonucleoprotein complex binding activity. Predicted to be involved in maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA). Predicted to be located in nucleolus and nucleoplasm. Predicted to be part of PeBoW complex and preribosome, large subunit precursor. Is an ortholog of human BOP1 (BOP1 ribosomal biogenesis factor). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y48B6A.1 | |||||||
| Corresponding_transcript | Y48B6A.1.1 | ||||||||
| Other_sequence (51) | |||||||||
| Associated_feature | WBsf650737 | ||||||||
| WBsf666358 | |||||||||
| WBsf990644 | |||||||||
| WBsf1013790 | |||||||||
| WBsf224249 | |||||||||
| WBsf224250 | |||||||||
| WBsf224251 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00037227 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00056874 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00071234 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00009351 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00000309 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00103599 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00061475 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00026751 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00106940 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00094101 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1023261 | ||||||||
| Expr1035756 | |||||||||
| Expr1160326 | |||||||||
| Expr2007658 | |||||||||
| Expr2025898 | |||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (119) | |||||||||
| Interaction (293) | |||||||||
| Map_info | Positive | Positive_clone | Y48B6A | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Interpolated_map_position | II | 22.4539 | |||||||
| Reference | WBPaper00028280 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00049828 | |||||||||
| WBPaper00055090 | |||||||||
| Method | Gene |
