WormBase Tree Display for Gene: WBGene00012973
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| WBGene00012973 | SMap | S_parent | Sequence | Y48A6B | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | spat-2 | Paper_evidence | WBPaper00027724 | |||||
| Sequence_name | Y48A6B.13 | ||||||||
| Molecular_name (66) | |||||||||
| Other_name | CELE_Y48A6B.13 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | spat-2 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:54 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 01 Nov 2006 11:33:19 | WBPerson1847 | Name_change | CGC_name | spat-2 | ||||
| 3 | 20 Oct 2016 10:55:05 | WBPerson1983 | Event | Acquires_merge | WBGene00012971 | ||||
| Acquires_merge | WBGene00012971 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | spat | ||||||||
| Allele (525) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (19) | |||||||||
| Structured_description | Concise_description | SPAT-2 encodes an unfamiliar protein with no obvious homologs outside ofnematodes, and with several stretches of low-complexity sequence thatmay be nonglobular; SPAT-2 is specifically required for PARprotein-dependent cell-polarity; as with par-3, par-6, pkc-3, andcdc-42, RNAi of spat-2 suppresses the embryonic lethality ofpar-2(it5ts) at restrictive temperature. | Paper_evidence | WBPaper00027724 | |||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 22 Feb 2007 00:00:00 | ||||||||
| Automated_description | Enriched in germ line; germline precursor cell; head mesodermal cell; and neurons based on microarray; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including daf-16; daf-2; and daf-12 based on microarray; tiling array; proteomic; and RNA-seq studies. Is affected by sixteen chemicals including rotenone; Cry5B; and Alovudine based on RNA-seq and microarray studies. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS (19) | ||||||||
| Corresponding_CDS_history | Y48A6B.13:wp225 | ||||||||
| Corresponding_transcript (28) | |||||||||
| Other_sequence | BMC07321_1 | ||||||||
| CRC04888_1 | |||||||||
| FG585167.1 | |||||||||
| JI470218.1 | |||||||||
| CBC09850_1 | |||||||||
| CR01723 | |||||||||
| CJC15226_1 | |||||||||
| CBC12235_1 | |||||||||
| FG587799.1 | |||||||||
| Associated_feature (24) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00077110 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00020724 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00056858 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00037216 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00020723 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00056860 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00006357 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00006337 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1019666 | ||||||||
| Expr1024402 | |||||||||
| Expr1035751 | |||||||||
| Expr1035753 | |||||||||
| Expr1160311 | |||||||||
| Expr1160313 | |||||||||
| Expr2016018 | |||||||||
| Expr2034253 | |||||||||
| Microarray_results (44) | |||||||||
| Expression_cluster (150) | |||||||||
| Interaction (11) | |||||||||
| Map_info | Map | III | Position | 5.87015 | Error | 0.00558 | |||
| Positive | Positive_clone | Y48A6B | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00027724 | ||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
