WormBase Tree Display for Gene: WBGene00012930
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WBGene00012930 | SMap | S_parent | Sequence | Y47D3A | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | obr-1 | Person_evidence | WBPerson1105 | |||||
Sequence_name | Y47D3A.17 | ||||||||
Molecular_name (18) | |||||||||
Other_name | CELE_Y47D3A.17 | Accession_evidence | NDB | BX284603 | |||||
Public_name | obr-1 | ||||||||
DB_info | Database | AceView | gene | 3M348 | |||||
WormQTL | gene | WBGene00012930 | |||||||
WormFlux | gene | WBGene00012930 | |||||||
NDB | locus_tag | CELE_Y47D3A.17 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00012930|UniProtKB=A7DTF2 | |||||||
family | PTHR10972 | ||||||||
NCBI | gene | 176555 | |||||||
RefSeq | protein | NM_001379929.1 | |||||||
NM_001129258.5 | |||||||||
NM_001379928.1 | |||||||||
NM_001392212.1 | |||||||||
NM_067047.6 | |||||||||
TREEFAM | TREEFAM_ID | TF320922 | |||||||
TrEMBL | UniProtAcc | A7DTF3 | |||||||
Q95Q23 | |||||||||
Q9U2C7 | |||||||||
A7DTF2 | |||||||||
G2HK04 | |||||||||
UniProt_GCRP | UniProtAcc | A7DTF2 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 26 May 2004 16:54:54 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
2 | 02 Jul 2004 16:55:44 | WBPerson1971 | Name_change | CGC_name | obr-1 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | obr | ||||||||
Allele (310) | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00005088 | ||||||||
00005089 | |||||||||
00005090 | |||||||||
00005091 | |||||||||
00005092 | |||||||||
00005093 | |||||||||
00005094 | |||||||||
00005095 | |||||||||
00008939 | |||||||||
00119900 | |||||||||
Ortholog (46) | |||||||||
Paralog (3) | |||||||||
Structured_description | Automated_description | Predicted to enable sterol binding activity and sterol transporter activity. Predicted to be involved in sterol transport. Predicted to be located in cytosol; perinuclear endoplasmic reticulum; and plasma membrane. Human ortholog(s) of this gene implicated in cholangiocarcinoma and colorectal cancer. Is an ortholog of human OSBP (oxysterol binding protein) and OSBP2 (oxysterol binding protein 2). | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Disease_info | Potential_model | DOID:4947 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:8504) | ||||
DOID:9256 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:8503) | ||||||
Molecular_info | Corresponding_CDS | Y47D3A.17a | |||||||
Y47D3A.17b | |||||||||
Y47D3A.17c | |||||||||
Y47D3A.17d | |||||||||
Y47D3A.17e | |||||||||
Corresponding_CDS_history | Y47D3A.17:wp20 | ||||||||
Corresponding_transcript | Y47D3A.17a.1 | ||||||||
Y47D3A.17b.1 | |||||||||
Y47D3A.17b.2 | |||||||||
Y47D3A.17b.3 | |||||||||
Y47D3A.17b.4 | |||||||||
Y47D3A.17c.1 | |||||||||
Y47D3A.17d.1 | |||||||||
Y47D3A.17e.1 | |||||||||
Other_sequence (51) | |||||||||
Associated_feature | WBsf651499 | ||||||||
WBsf667431 | |||||||||
WBsf667432 | |||||||||
WBsf667433 | |||||||||
WBsf994322 | |||||||||
WBsf994323 | |||||||||
WBsf994324 | |||||||||
WBsf1015961 | |||||||||
WBsf1015962 | |||||||||
WBsf227560 | |||||||||
Experimental_info (5) | |||||||||
Map_info | Map | III | Position | 8.18707 | Error | 0.038673 | |||
Positive | Positive_clone | Y47D3A | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference | WBPaper00010145 | ||||||||
WBPaper00030935 | |||||||||
WBPaper00031877 | |||||||||
WBPaper00036600 | |||||||||
WBPaper00036763 | |||||||||
WBPaper00038491 | |||||||||
WBPaper00038615 | |||||||||
WBPaper00055090 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |