WormBase Tree Display for Gene: WBGene00012512
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| WBGene00012512 | SMap | S_parent | Sequence | Y26E6A | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | ekl-5 | Paper_evidence | WBPaper00031487 | |||||
| Sequence_name | Y26E6A.1 | ||||||||
| Molecular_name | Y26E6A.1a | ||||||||
| Y26E6A.1a.1 | |||||||||
| CE44333 | |||||||||
| Y26E6A.1b | |||||||||
| CE16607 | |||||||||
| Y26E6A.1b.1 | |||||||||
| Other_name | CELE_Y26E6A.1 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | ekl-5 | ||||||||
| DB_info | Database | AceView | gene | XO534 | |||||
| WormQTL | gene | WBGene00012512 | |||||||
| WormFlux | gene | WBGene00012512 | |||||||
| NDB | locus_tag | CELE_Y26E6A.1 | |||||||
| NCBI | gene | 181500 | |||||||
| RefSeq | protein | NM_001404213.1 | |||||||
| NM_077916.4 | |||||||||
| TrEMBL | UniProtAcc | A0A8S4QFJ4 | |||||||
| O62418 | |||||||||
| UniProt_GCRP | UniProtAcc | O62418 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:53 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 20 Feb 2008 16:59:39 | WBPerson2970 | Name_change | CGC_name | ekl-5 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ekl | ||||||||
| Allele (46) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Contained_in_operon | CEOPX159 | ||||||||
| Ortholog (32) | |||||||||
| Structured_description | Automated_description | Enriched in ABplapapppp; ABprapapppp; germ line; intestine; and somatic gonad precursor based on RNA-seq and single-cell RNA-seq studies. Is affected by several genes including glp-1; dpy-10; and pie-1 based on microarray; tiling array; RNA-seq; and proteomic studies. Is affected by ten chemicals including bisphenol A; Alovudine; and stavudine based on RNA-seq and microarray studies. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y26E6A.1a | |||||||
| Y26E6A.1b | |||||||||
| Corresponding_CDS_history | Y26E6A.1:wp209 | ||||||||
| Corresponding_transcript | Y26E6A.1a.1 | ||||||||
| Y26E6A.1b.1 | |||||||||
| Associated_feature | WBsf671221 | ||||||||
| WBsf1007764 | |||||||||
| WBsf1007765 | |||||||||
| WBsf1007766 | |||||||||
| WBsf1007767 | |||||||||
| WBsf1024321 | |||||||||
| WBsf1024322 | |||||||||
| WBsf238178 | |||||||||
| WBsf238179 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00055752 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00036744 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00020144 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1013819 | ||||||||
| Expr1035538 | |||||||||
| Expr1159275 | |||||||||
| Expr2011267 | |||||||||
| Expr2029503 | |||||||||
| Drives_construct | WBCnstr00029934 | ||||||||
| Construct_product | WBCnstr00029934 | ||||||||
| Microarray_results (23) | |||||||||
| Expression_cluster (156) | |||||||||
| Interaction | WBInteraction000344991 | ||||||||
| WBInteraction000388672 | |||||||||
| WBInteraction000425749 | |||||||||
| WBInteraction000573747 | |||||||||
| WBInteraction000574405 | |||||||||
| Map_info | Map | X | Position | 15.1537 | Error | 0.038424 | |||
| Positive | Positive_clone | Y26E6A | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00031487 | ||||||||
| WBPaper00034527 | |||||||||
| WBPaper00035005 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
