WormBase Tree Display for Gene: WBGene00012446
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WBGene00012446 | SMap | S_parent | Sequence | Y17D7A | |||
---|---|---|---|---|---|---|---|
Identity | Version | 3 | |||||
Name | CGC_name | nhr-230 | Person_evidence | WBPerson600 | |||
Sequence_name | Y17D7A.1 | ||||||
Molecular_name | Y17D7A.1 | ||||||
Y17D7A.1.1 | |||||||
CE40242 | |||||||
Other_name | CELE_Y17D7A.1 | Accession_evidence | NDB | BX284605 | |||
Public_name | nhr-230 | ||||||
DB_info | Database | AceView | gene | 5T327 | |||
WormQTL | gene | WBGene00012446 | |||||
WormFlux | gene | WBGene00012446 | |||||
NDB | locus_tag | CELE_Y17D7A.1 | |||||
Panther | gene | CAEEL|WormBase=WBGene00012446|UniProtKB=O45905 | |||||
family | PTHR45680 | ||||||
NCBI | gene | 189442 | |||||
RefSeq | protein | NM_075280.4 | |||||
TREEFAM | TREEFAM_ID | TF315604 | |||||
TrEMBL | UniProtAcc | O45905 | |||||
UniProt_GCRP | UniProtAcc | O45905 | |||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (3) | ||||||
Acquires_merge | WBGene00012447 | ||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | nhr | ||||||
Allele (209) | |||||||
Strain | WBStrain00036774 | ||||||
WBStrain00036918 | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation (8) | |||||||
Contained_in_operon | CEOP5525 | ||||||
Ortholog (20) | |||||||
Paralog (218) | |||||||
Structured_description | Automated_description | Predicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus. | Paper_evidence | WBPaper00065943 | |||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | Y17D7A.1 | |||||
Corresponding_CDS_history | Y17D7A.1:wp158 | ||||||
Corresponding_transcript | Y17D7A.1.1 | ||||||
Other_sequence | PE00545 | ||||||
PT01789 | |||||||
MA03043 | |||||||
FC810692.1 | |||||||
MJ03898 | |||||||
GPC01244_1 | |||||||
JI475055.1 | |||||||
HC06417 | |||||||
Associated_feature | WBsf1003021 | ||||||
WBsf1003022 | |||||||
WBsf1003023 | |||||||
WBsf1021559 | |||||||
WBsf1021560 | |||||||
Transcription_factor | WBTranscriptionFactor000334 | ||||||
Experimental_info | RNAi_result | WBRNAi00055558 | Inferred_automatically | RNAi_primary | |||
WBRNAi00020071 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00020070 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00055557 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr1016998 | ||||||
Expr1159059 | |||||||
Expr2014131 | |||||||
Expr2032371 | |||||||
Microarray_results (28) | |||||||
Expression_cluster (101) | |||||||
Interaction | WBInteraction000199381 | ||||||
WBInteraction000238626 | |||||||
WBInteraction000273001 | |||||||
WBInteraction000286783 | |||||||
WBInteraction000294056 | |||||||
WBInteraction000344834 | |||||||
WBInteraction000353593 | |||||||
WBInteraction000399533 | |||||||
WBInteraction000461801 | |||||||
WBInteraction000527448 | |||||||
Map_info | Map | V | Position | 18.314 | Error | 0.047469 | |
Positive | Positive_clone | Y17D7A | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Mapping_data | Multi_point | 5323 | |||||
5346 | |||||||
5607 | |||||||
Pseudo_map_position | |||||||
Reference | WBPaper00027309 | ||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |