WormBase Tree Display for Gene: WBGene00012242
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| WBGene00012242 | SMap | S_parent | Sequence | W04D2 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | srt-39 | Person_evidence | WBPerson655 | |||||
| Sequence_name | W04D2.2 | ||||||||
| Molecular_name | W04D2.2a | ||||||||
| W04D2.2a.1 | |||||||||
| CE06540 | |||||||||
| W04D2.2c | |||||||||
| CE51388 | |||||||||
| W04D2.2b | |||||||||
| W04D2.2c.1 | |||||||||
| Other_name | CELE_W04D2.2 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | srt-39 | ||||||||
| DB_info | Database | WormQTL | gene | WBGene00012242 | |||||
| WormFlux | gene | WBGene00012242 | |||||||
| NDB | locus_tag | CELE_W04D2.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00012242|UniProtKB=Q23156 | |||||||
| family | PTHR23021 | ||||||||
| NCBI | gene | 189186 | |||||||
| RefSeq | protein | NM_001322589.1 | |||||||
| NR_003176.1 | |||||||||
| NM_001047710.1 | |||||||||
| TREEFAM | TREEFAM_ID | TF315399 | |||||||
| TrEMBL | UniProtAcc | Q23156 | |||||||
| A0A131MBY2 | |||||||||
| UniProt_GCRP | UniProtAcc | Q23156 | |||||||
| RNAcentral | URSid | URS000005EBC3 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:53 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 02 Dec 2004 09:41:19 | WBPerson2970 | Name_change | CGC_name | srt-39 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | srt | ||||||||
| Allele (22) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00002131 | ||||||||
| Contained_in_operon | CEOP5346 | ||||||||
| Ortholog (78) | |||||||||
| Paralog (69) | |||||||||
| Structured_description | Automated_description | Predicted to be located in membrane. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | W04D2.2a | |||||||
| W04D2.2c | |||||||||
| Corresponding_transcript | W04D2.2b | ||||||||
| W04D2.2a.1 | |||||||||
| W04D2.2c.1 | |||||||||
| Other_sequence | CJC13110_1 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00054767 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00036271 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1012632 | ||||||||
| Expr1158303 | |||||||||
| Expr2016666 | |||||||||
| Expr2034853 | |||||||||
| Drives_construct | WBCnstr00030051 | ||||||||
| Construct_product | WBCnstr00030051 | ||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (27) | |||||||||
| Interaction | WBInteraction000185417 | ||||||||
| WBInteraction000263209 | |||||||||
| WBInteraction000369604 | |||||||||
| WBInteraction000379454 | |||||||||
| WBInteraction000439853 | |||||||||
| Map_info | Map | V | Position | 4.34985 | Error | 0.016627 | |||
| Positive | Positive_clone | W04D2 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
