WormBase Tree Display for Gene: WBGene00012103
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| WBGene00012103 | SMap | S_parent | Sequence | T27F6 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | clec-12 | Person_evidence | WBPerson655 | |||||
| Sequence_name | T27F6.2 | ||||||||
| Molecular_name | T27F6.2 | ||||||||
| T27F6.2.1 | |||||||||
| CE16512 | |||||||||
| Other_name | CELE_T27F6.2 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | clec-12 | ||||||||
| DB_info | Database | AceView | gene | 1N64 | |||||
| WormQTL | gene | WBGene00012103 | |||||||
| WormFlux | gene | WBGene00012103 | |||||||
| NDB | locus_tag | CELE_T27F6.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00012103|UniProtKB=O45867 | |||||||
| family | PTHR22991 | ||||||||
| NCBI | gene | 189004 | |||||||
| RefSeq | protein | NM_060765.3 | |||||||
| TREEFAM | TREEFAM_ID | TF351663 | |||||||
| TrEMBL | UniProtAcc | O45867 | |||||||
| UniProt_GCRP | UniProtAcc | O45867 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:53 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 29 Apr 2005 13:53:45 | WBPerson2970 | Name_change | CGC_name | clec-12 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | clec | ||||||||
| Allele (28) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (46) | |||||||||
| Paralog (52) | |||||||||
| Structured_description | Automated_description | Enriched in several structures, including ABalpppapa; anal sphincter muscle; body wall muscle cell from C lineage; head mesodermal cell; and neurons based on RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including daf-2; skn-1; and eat-2 based on tiling array; microarray; and RNA-seq studies. Is affected by nineteen chemicals including rotenone; D-glucose; and Psoralens based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: C-type lectin fold; Spermadhesin, CUB domain superfamily; Lectin C-type domain; CUB domain; C-type lectin-like/link domain superfamily; and C-type lectin-like. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | T27F6.2 | |||||||
| Corresponding_transcript | T27F6.2.1 | ||||||||
| Associated_feature | WBsf665024 | ||||||||
| WBsf985566 | |||||||||
| WBsf985567 | |||||||||
| WBsf985568 | |||||||||
| WBsf220431 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00070112 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00004326 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00054340 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1019383 | ||||||||
| Expr1035344 | |||||||||
| Expr1157886 | |||||||||
| Expr2010065 | |||||||||
| Expr2028306 | |||||||||
| Microarray_results (14) | |||||||||
| Expression_cluster (133) | |||||||||
| Map_info | Map | I | Position | 13.2294 | Error | 0.000638 | |||
| Positive | Positive_clone | T27F6 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00030811 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
