WormBase Tree Display for Gene: WBGene00012017
expand all nodes | collapse all nodes | view schema
WBGene00012017 | SMap | S_parent | Sequence | T25C8 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | shpk-1 | Person_evidence | WBPerson81 | |||||
Sequence_name | T25C8.1 | ||||||||
Molecular_name | T25C8.1 | ||||||||
T25C8.1.1 | |||||||||
CE54129 | |||||||||
Other_name | exc-10 | ||||||||
CELE_T25C8.1 | Accession_evidence | NDB | BX284603 | ||||||
Public_name | shpk-1 | ||||||||
DB_info | Database | AceView | gene | 3O699 | |||||
WormQTL | gene | WBGene00012017 | |||||||
WormFlux | gene | WBGene00012017 | |||||||
NDB | locus_tag | CELE_T25C8.1 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00012017|UniProtKB=O45814 | |||||||
family | PTHR10196 | ||||||||
NCBI | gene | 188886 | |||||||
RefSeq | protein | NM_001379986.2 | |||||||
TREEFAM | TREEFAM_ID | TF315140 | |||||||
TrEMBL | UniProtAcc | O45814 | |||||||
UniProt_GCRP | UniProtAcc | O45814 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 26 May 2004 16:54:53 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
2 | 20 May 2019 14:10:26 | WBPerson1983 | Name_change (2) | ||||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | shpk | ||||||||
Allele (65) | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00035306 | ||||||||
00035307 | |||||||||
00035308 | |||||||||
00035309 | |||||||||
00035310 | |||||||||
00035311 | |||||||||
00035312 | |||||||||
00119213 | |||||||||
00119214 | |||||||||
Ortholog (20) | |||||||||
Paralog | WBGene00011147 | Caenorhabditis elegans | From_analysis | Panther | |||||
WBGene00020007 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WBGene00016939 | Caenorhabditis elegans | From_analysis | Panther | ||||||
Structured_description | Automated_description | Predicted to enable sedoheptulokinase activity. Predicted to be involved in glycerol metabolic process and phosphorylation. Predicted to be located in cytosol. Is an ortholog of human SHPK (sedoheptulokinase). | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed (2) | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | T25C8.1 | |||||||
Corresponding_CDS_history | T25C8.1:wp141 | ||||||||
T25C8.1:wp275 | |||||||||
Corresponding_transcript | T25C8.1.1 | ||||||||
Associated_feature | WBsf645721 | ||||||||
WBsf659746 | |||||||||
WBsf994946 | |||||||||
WBsf994947 | |||||||||
WBsf1016420 | |||||||||
WBsf226036 | |||||||||
Experimental_info | RNAi_result | WBRNAi00019202 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00006457 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00054118 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1022106 | ||||||||
Expr1157663 | |||||||||
Expr2006494 | |||||||||
Expr2024713 | |||||||||
Microarray_results (19) | |||||||||
Expression_cluster (56) | |||||||||
Interaction (26) | |||||||||
Map_info | Map | III | Position | 21.2932 | |||||
Positive | Positive_clone | T25C8 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference | WBPaper00038491 | ||||||||
WBPaper00055090 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |